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Lsi11G016860 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi11G016860
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr11:25070073..25070357
RNA-Seq ExpressionLsi11G016860
SyntenyLsi11G016860
Gene Ontology termsGO:0045168 - cell-cell signaling involved in cell fate commitment (biological process)
GO:0005615 - extracellular space (cellular component)
InterPro domainsIPR039617 - CLAVATA3/ESR (CLE)-related protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061638.1 hypothetical protein E6C27_scaffold212G00060 [Cucumis melo var. makuwa]8.0e-2677.17Show/hide
Query:  NTKLAPLMAVLFMVMLVTAVAGHHASP-PWPVEEEAKSRGGGSSSSSIMIMRKFGYSKRQMEHLRRLSSSTTARYIPGGPDSQHHSQPPRLP
        N  LAPLMAVLFMVMLVTA A  HA+  PW VEE  +      SSS  MIMRKFGYSKRQMEHLRRLSSS+TARYIPGGPDSQHHSQPPRLP
Subjt:  NTKLAPLMAVLFMVMLVTAVAGHHASP-PWPVEEEAKSRGGGSSSSSIMIMRKFGYSKRQMEHLRRLSSSTTARYIPGGPDSQHHSQPPRLP
KAE8647339.1 hypothetical protein Csa_003556, partial [Cucumis sativus]2.3e-2073.49Show/hide
Query:  PLMAVLFMVMLVTAVAGHHASPPWPVEEEAKSRGGGSSSSSIMIMRKFGYSKRQMEHLRRLSSSTTARYIPGGPDSQHHSQPP
        PLMAVLFM MLVTA    HA+      EEA  R    SSSS M+MRKFGYSKRQMEHLRRLSSS+T RYIPGGPDSQHHSQPP
Subjt:  PLMAVLFMVMLVTAVAGHHASPPWPVEEEAKSRGGGSSSSSIMIMRKFGYSKRQMEHLRRLSSSTTARYIPGGPDSQHHSQPP
KAG6572409.1 hypothetical protein SDJN03_29137, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2170.97Show/hide
Query:  NTKLAPLMAVLFMVMLVTAVAGHHASPPWPVEEEAKSRGGG--SSSSSIMIMRKFGYSKRQMEHLRRLSSSTTARYIPGGPDSQHHSQPPRLP
        N K APL AV+FMVMLVTA AG HA P    E  A   GGG  SSSSS MIMR+ GY+K QMEHLRRLSSS TARYIPGGPDSQHHS+ PR P
Subjt:  NTKLAPLMAVLFMVMLVTAVAGHHASPPWPVEEEAKSRGGG--SSSSSIMIMRKFGYSKRQMEHLRRLSSSTTARYIPGGPDSQHHSQPPRLP
KAG6589262.1 hypothetical protein SDJN03_17827, partial [Cucurbita argyrosperma subsp. sororia]2.8e-2368.09Show/hide
Query:  MALNTKLAPLMAVLFMVMLVTAVAGHHASPPWPVEEEAKSRGGGSSSSSIMIMRKFGYSKRQMEHLRRLSSSTTARYIPGGPDSQHHSQPPRLP
        +  ++KLAP MAVLF+ ML+  VAG HA+PPW  EE  +      SSSSIMIMRKFGYSK QMEHL+RLSSS T RY PGGPDSQHHS PPRLP
Subjt:  MALNTKLAPLMAVLFMVMLVTAVAGHHASPPWPVEEEAKSRGGGSSSSSIMIMRKFGYSKRQMEHLRRLSSSTTARYIPGGPDSQHHSQPPRLP
TrEMBL top hitse value%identityAlignment
A0A0A0KGI4 Uncharacterized protein1.5e-2274.42Show/hide
Query:  PLMAVLFMVMLVTAVAGHHASPPWPVEEEAKSRGGGSSSSSIMIMRKFGYSKRQMEHLRRLSSSTTARYIPGGPDSQHHSQPPRLP
        PLMAVLFM MLVTA    HA+      EEA  R    SSSS M+MRKFGYSKRQMEHLRRLSSS+T RYIPGGPDSQHHSQPPRLP
Subjt:  PLMAVLFMVMLVTAVAGHHASPPWPVEEEAKSRGGGSSSSSIMIMRKFGYSKRQMEHLRRLSSSTTARYIPGGPDSQHHSQPPRLP
A0A5D3C664 Uncharacterized protein3.9e-2677.17Show/hide
Query:  NTKLAPLMAVLFMVMLVTAVAGHHASP-PWPVEEEAKSRGGGSSSSSIMIMRKFGYSKRQMEHLRRLSSSTTARYIPGGPDSQHHSQPPRLP
        N  LAPLMAVLFMVMLVTA A  HA+  PW VEE  +      SSS  MIMRKFGYSKRQMEHLRRLSSS+TARYIPGGPDSQHHSQPPRLP
Subjt:  NTKLAPLMAVLFMVMLVTAVAGHHASP-PWPVEEEAKSRGGGSSSSSIMIMRKFGYSKRQMEHLRRLSSSTTARYIPGGPDSQHHSQPPRLP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACTCAACACAAAACTTGCTCCATTAATGGCTGTTCTTTTCATGGTGATGCTTGTCACCGCGGTGGCTGGCCACCATGCATCGCCGCCGTGGCCGGTGGAGGAGGA
GGCTAAAAGCAGAGGCGGCGGCAGCAGCAGCAGCAGCATTATGATAATGCGTAAGTTTGGTTATAGTAAAAGGCAAATGGAGCATTTAAGAAGACTTTCTTCATCCACTA
CTGCAAGATATATTCCTGGAGGGCCTGATTCTCAACATCATTCCCAACCACCTCGTTTGCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACTCAACACAAAACTTGCTCCATTAATGGCTGTTCTTTTCATGGTGATGCTTGTCACCGCGGTGGCTGGCCACCATGCATCGCCGCCGTGGCCGGTGGAGGAGGA
GGCTAAAAGCAGAGGCGGCGGCAGCAGCAGCAGCAGCATTATGATAATGCGTAAGTTTGGTTATAGTAAAAGGCAAATGGAGCATTTAAGAAGACTTTCTTCATCCACTA
CTGCAAGATATATTCCTGGAGGGCCTGATTCTCAACATCATTCCCAACCACCTCGTTTGCCTTAG
Protein sequenceShow/hide protein sequence
MALNTKLAPLMAVLFMVMLVTAVAGHHASPPWPVEEEAKSRGGGSSSSSIMIMRKFGYSKRQMEHLRRLSSSTTARYIPGGPDSQHHSQPPRLP