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LsiUNG000400 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsiUNG000400
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr00:730006..730338
RNA-Seq ExpressionLsiUNG000400
SyntenyLsiUNG000400
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038574.1 uncharacterized protein E6C27_scaffold92G001040 [Cucumis melo var. makuwa]1.1e-4283.19Show/hide
Query:  MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSS-HKKAKTRRIHS-DCSGNEPRLVRSSGMRRDWSFED
        M+MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP  +  IK+D+DISSS  HKK ++RR  S D  GNEPRLVRSSGMRRDWSFED
Subjt:  MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSS-HKKAKTRRIHS-DCSGNEPRLVRSSGMRRDWSFED

Query:  LGLRD-QKKGRFH
        LGLRD QKKGRFH
Subjt:  LGLRD-QKKGRFH

KGN60385.1 hypothetical protein Csa_002007 [Cucumis sativus]5.8e-4483.33Show/hide
Query:  MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAEL-TPPSYESIKIDDD--ISSSS-HKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSF
        M+MNCLTCQALPRTQSDRE N GYETPS+RGKSCCLYVPRRWS EL TP SY+SIKIDDD  ISSS+ HKKA+TRR+ S+C GNEP+LVRSSGMRRDWSF
Subjt:  MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAEL-TPPSYESIKIDDD--ISSSS-HKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSF

Query:  EDLGLRDQKKGRFH
        EDLGLR QKKGRFH
Subjt:  EDLGLRDQKKGRFH

XP_008465978.2 PREDICTED: uncharacterized protein LOC103503546 [Cucumis melo]4.2e-4283.78Show/hide
Query:  MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSS-HKKAKTRRIHS-DCSGNEPRLVRSSGMRRDWSFEDLG
        MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP  +  IK+D+DISSS  HKK ++RR  S D  GNEPRLVRSSGMRRDWSFEDLG
Subjt:  MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSS-HKKAKTRRIHS-DCSGNEPRLVRSSGMRRDWSFEDLG

Query:  LRD-QKKGRFH
        LRD QKKGRFH
Subjt:  LRD-QKKGRFH

XP_031737602.1 uncharacterized protein LOC116402474 [Cucumis sativus]2.9e-4383.93Show/hide
Query:  MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAEL-TPPSYESIKIDDD--ISSSS-HKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSFED
        MNCLTCQALPRTQSDRE N GYETPS+RGKSCCLYVPRRWS EL TP SY+SIKIDDD  ISSS+ HKKA+TRR+ S+C GNEP+LVRSSGMRRDWSFED
Subjt:  MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAEL-TPPSYESIKIDDD--ISSSS-HKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSFED

Query:  LGLRDQKKGRFH
        LGLR QKKGRFH
Subjt:  LGLRDQKKGRFH

XP_038887010.1 uncharacterized protein LOC120077178 [Benincasa hispida]5.1e-4890Show/hide
Query:  MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSSHKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSFEDLG
        MSMNCLTCQALPRTQSDRE NHGYET SSRGKSCCLYV RRWSAELTPPSYESIK DDDISSS  KKAK RR+HSDC  NEPRLVRSSGMRRDWSFEDLG
Subjt:  MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSSHKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSFEDLG

Query:  LRDQKKGRFH
        LRDQKK RFH
Subjt:  LRDQKKGRFH

TrEMBL top hitse value%identityAlignment
A0A0A0LEC0 Uncharacterized protein2.8e-4483.33Show/hide
Query:  MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAEL-TPPSYESIKIDDD--ISSSS-HKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSF
        M+MNCLTCQALPRTQSDRE N GYETPS+RGKSCCLYVPRRWS EL TP SY+SIKIDDD  ISSS+ HKKA+TRR+ S+C GNEP+LVRSSGMRRDWSF
Subjt:  MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAEL-TPPSYESIKIDDD--ISSSS-HKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSF

Query:  EDLGLRDQKKGRFH
        EDLGLR QKKGRFH
Subjt:  EDLGLRDQKKGRFH

A0A1S3CRL3 uncharacterized protein LOC1035035462.0e-4283.78Show/hide
Query:  MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSS-HKKAKTRRIHS-DCSGNEPRLVRSSGMRRDWSFEDLG
        MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP  +  IK+D+DISSS  HKK ++RR  S D  GNEPRLVRSSGMRRDWSFEDLG
Subjt:  MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSS-HKKAKTRRIHS-DCSGNEPRLVRSSGMRRDWSFEDLG

Query:  LRD-QKKGRFH
        LRD QKKGRFH
Subjt:  LRD-QKKGRFH

A0A5A7T546 Uncharacterized protein5.3e-4383.19Show/hide
Query:  MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSS-HKKAKTRRIHS-DCSGNEPRLVRSSGMRRDWSFED
        M+MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP  +  IK+D+DISSS  HKK ++RR  S D  GNEPRLVRSSGMRRDWSFED
Subjt:  MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSS-HKKAKTRRIHS-DCSGNEPRLVRSSGMRRDWSFED

Query:  LGLRD-QKKGRFH
        LGLRD QKKGRFH
Subjt:  LGLRD-QKKGRFH

A0A5D3E5T4 Uncharacterized protein2.0e-4283.78Show/hide
Query:  MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSS-HKKAKTRRIHS-DCSGNEPRLVRSSGMRRDWSFEDLG
        MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTP  +  IK+D+DISSS  HKK ++RR  S D  GNEPRLVRSSGMRRDWSFEDLG
Subjt:  MNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSS-HKKAKTRRIHS-DCSGNEPRLVRSSGMRRDWSFEDLG

Query:  LRD-QKKGRFH
        LRD QKKGRFH
Subjt:  LRD-QKKGRFH

A0A6J1DZN2 uncharacterized protein LOC1110260674.2e-3266.93Show/hide
Query:  MSMNCLTCQALPRTQSDRENN----HGYETPSS--RGKSCCLYVPRRWSAELTPPSYESIKIDDDIS--------SSSHKKAKTRRIHSDCSG---NEPR
        MSMNCLTCQALPRTQSDRENN    + YET SS  RGKSCCL+V RRWSAELTP SY  IK   D +        S S KK K R + S       NEPR
Subjt:  MSMNCLTCQALPRTQSDRENN----HGYETPSS--RGKSCCLYVPRRWSAELTPPSYESIKIDDDIS--------SSSHKKAKTRRIHSDCSG---NEPR

Query:  LVRSSGMRRDWSFEDLGLRDQKKGRFH
        LVRSSGMRRDWSFEDL LRDQKKGRFH
Subjt:  LVRSSGMRRDWSFEDLGLRDQKKGRFH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G35215.1 unknown protein1.8e-0633.33Show/hide
Query:  MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSSHKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSFEDL
        MS+NCL C  L RT SDR+     ++      +   +       E    +  S+ +   + +  H++  +  I      +EP+LVRSSG+RRDWSFEDL
Subjt:  MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSSHKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSFEDL

AT5G46770.1 unknown protein8.8e-1439.69Show/hide
Query:  MSMNCLTCQALPRTQSDRENNHG------YETPSSRGKSCCL--YVPRRWSAELTPPSYESIKIDDDISSSSHKKAKTRRIHS-DCSG------------
        MS+NCL+CQALPRT S+++ +         E  +  GK+CC+     R WS  L+P  YE  KI    SS +HK  K ++IH    SG            
Subjt:  MSMNCLTCQALPRTQSDRENNHG------YETPSSRGKSCCL--YVPRRWSAELTPPSYESIKIDDDISSSSHKKAKTRRIHS-DCSG------------

Query:  -NEPRLVRSSGMRRDWSFEDL---GLRDQKK
          +P+LVRS+G+RR+WSFE+L   GL ++K+
Subjt:  -NEPRLVRSSGMRRDWSFEDL---GLRDQKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCATGAATTGCCTAACATGCCAAGCCCTTCCAAGGACCCAATCTGATAGGGAGAATAATCATGGTTATGAAACCCCCTCTAGTAGAGGCAAATCATGTTGCCTATA
CGTCCCGCGGAGGTGGTCGGCCGAATTGACTCCCCCGTCGTACGAGTCGATTAAAATCGACGACGATATTAGCTCTTCTTCGCACAAGAAGGCCAAGACTCGCCGCATTC
ATAGTGACTGTAGCGGGAACGAGCCGAGGTTGGTGAGGAGCTCGGGGATGAGAAGGGATTGGAGCTTTGAGGATTTGGGATTGAGAGATCAAAAGAAAGGGAGATTCCAT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCATGAATTGCCTAACATGCCAAGCCCTTCCAAGGACCCAATCTGATAGGGAGAATAATCATGGTTATGAAACCCCCTCTAGTAGAGGCAAATCATGTTGCCTATA
CGTCCCGCGGAGGTGGTCGGCCGAATTGACTCCCCCGTCGTACGAGTCGATTAAAATCGACGACGATATTAGCTCTTCTTCGCACAAGAAGGCCAAGACTCGCCGCATTC
ATAGTGACTGTAGCGGGAACGAGCCGAGGTTGGTGAGGAGCTCGGGGATGAGAAGGGATTGGAGCTTTGAGGATTTGGGATTGAGAGATCAAAAGAAAGGGAGATTCCAT
TGA
Protein sequenceShow/hide protein sequence
MSMNCLTCQALPRTQSDRENNHGYETPSSRGKSCCLYVPRRWSAELTPPSYESIKIDDDISSSSHKKAKTRRIHSDCSGNEPRLVRSSGMRRDWSFEDLGLRDQKKGRFH