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LsiUNG000610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsiUNG000610
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionphotosystem I subunit O
Genome locationchr00:1113651..1117080
RNA-Seq ExpressionLsiUNG000610
SyntenyLsiUNG000610
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR017498 - Photosystem I PsaO


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139499.1 photosystem I subunit O [Cucumis sativus]2.2e-7092.52Show/hide
Query:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA
        MATAFAT SSV GLGT+SLSSPSSRSPRLVSGF++ PVAARNPL++A ASGG+FTCFERDWLRRDLNVIGFGLIGWIAPSSIPVI GKSLTGLFFESIGA
Subjt:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA

Query:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK
        ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK
Subjt:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK

XP_008463649.1 PREDICTED: photosystem I subunit O [Cucumis melo]1.8e-6991.84Show/hide
Query:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA
        MATAFAT SSV GLGT+SLSSPSSRSPRLVSGF++SPVAARNPL +  AS GRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVI+GKSLTGLFFESIG 
Subjt:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA

Query:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK
        ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK
Subjt:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK

XP_022142590.1 photosystem I subunit O [Momordica charantia]1.4e-6990.54Show/hide
Query:  MATAFATSSSVVGLG-TSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIG
        MATAFATSS++VGLG +SSLSSPSSRSPRL S FV+SP AARNPL++A ASGGRFTCFERDWLRRDLNVIGFGLIGW+APSSIPVI+GKSLTGLFFESIG
Subjt:  MATAFATSSSVVGLG-TSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIG

Query:  AELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK
        AELAHFPSPPALTSQFWLWL+TWHLGLFITLTFGQIGFKGRTEDYFSK
Subjt:  AELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK

XP_022973174.1 photosystem I subunit O [Cucurbita maxima]2.8e-7090.48Show/hide
Query:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA
        MA+AFATSSSVVGLG+SSLSSPSSRSPRLVSGF++ PV ARNP  +A + GGRFTCF+RDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA
Subjt:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA

Query:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK
        ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYF K
Subjt:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK

XP_038895620.1 photosystem I subunit O [Benincasa hispida]1.4e-7294.56Show/hide
Query:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA
        MATAFATSSSVVGLGT+SLSSPSSRSPRLVSGFV+ PV ARNP A+A ASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVI+GKSLTGLFFESIGA
Subjt:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA

Query:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK
        ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK
Subjt:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK

TrEMBL top hitse value%identityAlignment
A0A0A0LT61 Uncharacterized protein1.1e-7092.52Show/hide
Query:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA
        MATAFAT SSV GLGT+SLSSPSSRSPRLVSGF++ PVAARNPL++A ASGG+FTCFERDWLRRDLNVIGFGLIGWIAPSSIPVI GKSLTGLFFESIGA
Subjt:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA

Query:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK
        ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK
Subjt:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK

A0A1S3CJR4 photosystem I subunit O8.9e-7091.84Show/hide
Query:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA
        MATAFAT SSV GLGT+SLSSPSSRSPRLVSGF++SPVAARNPL +  AS GRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVI+GKSLTGLFFESIG 
Subjt:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA

Query:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK
        ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK
Subjt:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK

A0A6J1CLD0 photosystem I subunit O6.8e-7090.54Show/hide
Query:  MATAFATSSSVVGLG-TSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIG
        MATAFATSS++VGLG +SSLSSPSSRSPRL S FV+SP AARNPL++A ASGGRFTCFERDWLRRDLNVIGFGLIGW+APSSIPVI+GKSLTGLFFESIG
Subjt:  MATAFATSSSVVGLG-TSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIG

Query:  AELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK
        AELAHFPSPPALTSQFWLWL+TWHLGLFITLTFGQIGFKGRTEDYFSK
Subjt:  AELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK

A0A6J1EID2 photosystem I subunit O4.9e-6888.44Show/hide
Query:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA
        MA+AFATSSSVVGLG+SSLSSPSSRSPRLVS FV+ PV ARNP  +  + GGR TCF+RDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIG 
Subjt:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA

Query:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK
        ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYF K
Subjt:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK

A0A6J1IDS7 photosystem I subunit O1.4e-7090.48Show/hide
Query:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA
        MA+AFATSSSVVGLG+SSLSSPSSRSPRLVSGF++ PV ARNP  +A + GGRFTCF+RDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA
Subjt:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA

Query:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK
        ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYF K
Subjt:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK

SwissProt top hitse value%identityAlignment
Q949Q5 Photosystem I subunit O1.4e-5671.72Show/hide
Query:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA
        MA  FAT S+V+GLG SS+++         S F++  ++A+NPL +A ASGGR TCFER+WLRRDLNV+GFGLIGW+APSSIP I+GKSLTGLFF+SIG 
Subjt:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA

Query:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYF
        ELAHFP+PPALTSQFWLWL+TWHLGLF+ LTFGQIGFKGRTEDYF
Subjt:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYF

Arabidopsis top hitse value%identityAlignment
AT1G08380.1 photosystem I subunit O1.0e-5771.72Show/hide
Query:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA
        MA  FAT S+V+GLG SS+++         S F++  ++A+NPL +A ASGGR TCFER+WLRRDLNV+GFGLIGW+APSSIP I+GKSLTGLFF+SIG 
Subjt:  MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGA

Query:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYF
        ELAHFP+PPALTSQFWLWL+TWHLGLF+ LTFGQIGFKGRTEDYF
Subjt:  ELAHFPSPPALTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACCGCCTTCGCTACTTCATCCTCCGTCGTCGGCCTCGGAACCTCCTCCCTCTCCTCTCCTTCCTCCAGATCTCCGCGTCTCGTCTCCGGGTTCGTCAGGTCGCC
TGTAGCCGCCAGGAATCCGCTTGCCATGGCGCATGCATCCGGCGGTAGGTTCACCTGCTTTGAGAGAGATTGGCTGCGGAGAGATCTGAATGTGATCGGATTTGGACTGA
TCGGGTGGATTGCACCGTCGAGCATTCCGGTGATCGATGGGAAGAGCTTGACGGGGCTCTTCTTTGAGAGCATTGGGGCAGAGCTTGCGCATTTTCCTTCTCCACCCGCT
CTCACTTCTCAGTTCTGGTTGTGGCTGATCACATGGCACTTGGGACTCTTCATTACGCTTACCTTTGGCCAAATCGGGTTTAAGGGGAGGACCGAAGACTACTTTTCAAA
GTGA
mRNA sequenceShow/hide mRNA sequence
CTAAATAGTGCGCCTTACCAGATGTTAGTATCCCGATCTTAAAAACACAATATTGCTTCGTAAAATGAAAACCTAAAGATCCCACCACCACACACCACAAATAATTGTTT
TATGTTTGATGAAAAATACTTGTTGAATTAGTAGAAAACGGCCCACTTTATCCAAAAAATTCCGAGGTGTCAAAGCTTGATTCATCAGAAATTGATTCACTATCCACAGC
AATCAAATCCACAATCCCCCAAATCTCAACCACAAAAATTTCCCAACAAAATCCCCACTCCTTTTCCCCTCACTTCTACAAACCAACCACACCACCCAAGCCCTAATCCG
CACCAATCTTCCCGCAAAATGGCAACCGCCTTCGCTACTTCATCCTCCGTCGTCGGCCTCGGAACCTCCTCCCTCTCCTCTCCTTCCTCCAGATCTCCGCGTCTCGTCTC
CGGGTTCGTCAGGTCGCCTGTAGCCGCCAGGAATCCGCTTGCCATGGCGCATGCATCCGGCGGTAGGTTCACCTGCTTTGAGAGAGATTGGCTGCGGAGAGATCTGAATG
TGATCGGATTTGGACTGATCGGGTGGATTGCACCGTCGAGCATTCCGGTGATCGATGGGAAGAGCTTGACGGGGCTCTTCTTTGAGAGCATTGGGGCAGAGCTTGCGCAT
TTTCCTTCTCCACCCGCTCTCACTTCTCAGTTCTGGTTGTGGCTGATCACATGGCACTTGGGACTCTTCATTACGCTTACCTTTGGCCAAATCGGGTTTAAGGGGAGGAC
CGAAGACTACTTTTCAAAGTGAAAATGTAATCATTCTTAAAAAGGAGAGTGAATTTTAGTTTTTATTATTCATGTTTATAAGTTATAAGTAGTGTTTGTGGCCATGATTT
TCTTCATGTAAATCGTTTCAACCTCCAAATCTTGGTATAACTTGTGTTAATTGATGAAATGATGCCTTCACTAAACCTATTCAACTCGACTCAGTTAATTTATTAAGTTA
GAGGAAAAATTTGAATGATTATCCTCCTAAATAAAGAAAATTGTTTCAATCACATCCTACTATGGT
Protein sequenceShow/hide protein sequence
MATAFATSSSVVGLGTSSLSSPSSRSPRLVSGFVRSPVAARNPLAMAHASGGRFTCFERDWLRRDLNVIGFGLIGWIAPSSIPVIDGKSLTGLFFESIGAELAHFPSPPA
LTSQFWLWLITWHLGLFITLTFGQIGFKGRTEDYFSK