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LsiUNG000800 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsiUNG000800
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L35
Genome locationchr00:2456020..2460426
RNA-Seq ExpressionLsiUNG000800
SyntenyLsiUNG000800
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8055733.1 hypothetical protein FH972_012555 [Carpinus fangiana]1.0e-0456.36Show/hide
Query:  KAEFGEFVTKGVTSWRQRAR------SKRSKRKLRQPAIVPLAYAKVMKKLNFCG
        K+ F       +  W++  R      SK+SKR+LRQPAIVPLAYAKVMKKLNFCG
Subjt:  KAEFGEFVTKGVTSWRQRAR------SKRSKRKLRQPAIVPLAYAKVMKKLNFCG

XP_015867872.1 uncharacterized protein LOC107405347 [Ziziphus jujuba]1.0e-0456.36Show/hide
Query:  KAEFGEFVTKGVTSWRQRAR------SKRSKRKLRQPAIVPLAYAKVMKKLNFCG
        K+ F       +  W++  R      SK+SKR+LRQPAIVPLAYAKVMKKLNFCG
Subjt:  KAEFGEFVTKGVTSWRQRAR------SKRSKRKLRQPAIVPLAYAKVMKKLNFCG

XP_038708453.1 uncharacterized protein LOC120003513 [Tripterygium wilfordii]7.7e-0529.27Show/hide
Query:  KMRENVTKSPFFQVVFNELMVGECIEQVGRISFYAKVTFTWGLLEIGL-----EILECMGILGSRSRKVPKQQEILRKVKFLDRLEKEASLAEVFEDER-
        K++   T S  + V  +   +  C  Q+G     A  T +W L ++            + +L  RS  +P     +R V   +R +K   +  V    + 
Subjt:  KMRENVTKSPFFQVVFNELMVGECIEQVGRISFYAKVTFTWGLLEIGL-----EILECMGILGSRSRKVPKQQEILRKVKFLDRLEKEASLAEVFEDER-

Query:  ------AYLKAEFGEFVTKGVTSWRQ------RARSKRSKRKLRQPAIVPLAYAKVMKKLNFCG
              +  K  F       +  W++        +SK+SKR+LRQPAIVP A+AKVMKKLNFCG
Subjt:  ------AYLKAEFGEFVTKGVTSWRQ------RARSKRSKRKLRQPAIVPLAYAKVMKKLNFCG

XP_038887770.1 uncharacterized protein LOC120077803 [Benincasa hispida]3.5e-0590.32Show/hide
Query:  ARSKRSKRKLRQPAIVPLAYAKVMKKLNFCG
        ++SKRSKR+LRQPAIVPLAYAKVMKKLNFCG
Subjt:  ARSKRSKRKLRQPAIVPLAYAKVMKKLNFCG

XP_042952780.1 uncharacterized protein LOC122289658 [Carya illinoinensis]1.7e-0454.55Show/hide
Query:  KAEFGEFVTKGVTSWRQRAR------SKRSKRKLRQPAIVPLAYAKVMKKLNFCG
        K+ F       +  W++  R      SK+SKR+LRQPAIVP+AYAKVMKKLNFCG
Subjt:  KAEFGEFVTKGVTSWRQRAR------SKRSKRKLRQPAIVPLAYAKVMKKLNFCG

TrEMBL top hitse value%identityAlignment
A0A067F5R1 Uncharacterized protein8.3e-0586.67Show/hide
Query:  RSKRSKRKLRQPAIVPLAYAKVMKKLNFCG
        +SK+SKR+LRQPA+VPLAYAKVMKKLNFCG
Subjt:  RSKRSKRKLRQPAIVPLAYAKVMKKLNFCG

A0A142CD00 Formin-like protein 201.1e-0483.87Show/hide
Query:  ARSKRSKRKLRQPAIVPLAYAKVMKKLNFCG
        ++SK+SKR+LRQP IVPLAYAKVMKKLNFCG
Subjt:  ARSKRSKRKLRQPAIVPLAYAKVMKKLNFCG

A0A5N6R5N6 Uncharacterized protein4.9e-0556.36Show/hide
Query:  KAEFGEFVTKGVTSWRQRAR------SKRSKRKLRQPAIVPLAYAKVMKKLNFCG
        K+ F       +  W++  R      SK+SKR+LRQPAIVPLAYAKVMKKLNFCG
Subjt:  KAEFGEFVTKGVTSWRQRAR------SKRSKRKLRQPAIVPLAYAKVMKKLNFCG

A0A6P3Z338 uncharacterized protein LOC1074053474.9e-0556.36Show/hide
Query:  KAEFGEFVTKGVTSWRQRAR------SKRSKRKLRQPAIVPLAYAKVMKKLNFCG
        K+ F       +  W++  R      SK+SKR+LRQPAIVPLAYAKVMKKLNFCG
Subjt:  KAEFGEFVTKGVTSWRQRAR------SKRSKRKLRQPAIVPLAYAKVMKKLNFCG

V4T3A6 Uncharacterized protein8.3e-0586.67Show/hide
Query:  RSKRSKRKLRQPAIVPLAYAKVMKKLNFCG
        +SK+SKR+LRQPA+VPLAYAKVMKKLNFCG
Subjt:  RSKRSKRKLRQPAIVPLAYAKVMKKLNFCG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G45590.1 Ribosomal protein L351.5e-0679.31Show/hide
Query:  RSKRSKRKLRQPAIVPLAYAKVMKKLNFC
        +SK+SKR+LRQP +VP AYAKVMKKLNFC
Subjt:  RSKRSKRKLRQPAIVPLAYAKVMKKLNFC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGTAAACCTATTCTGTTTAGTTAAGACTCTGGATGCCAGTAAATGTTATGATTCTTCCTTTAAGGTTTACAAATGGATGATTTTCATTTTACTCCTAAAGTTATC
ATCCAGCATCTTATGTCCAACAATTAGCTCTAAAGTCTTATACCTAGAAATTATTGTTGTCACCATAATGCGAGATAAAATGCGGGAGAATGTGACAAAGTCACCCTTCT
TTCAAGTTGTCTTTAATGAATTGATGGTTGGTGAATGTATCGAGCAGGTGGGAAGGATTTCGTTTTATGCAAAAGTTACATTCACTTGGGGCCTCCTTGAAATAGGCCTT
GAAATCTTGGAATGTATGGGGATATTAGGATCAAGAAGCAGGAAGGTTCCAAAGCAGCAAGAGATCTTGAGGAAGGTTAAGTTTCTAGATAGGCTTGAAAAGGAGGCCTC
TCTTGCAGAGGTTTTCGAAGATGAGCGAGCCTATCTAAAGGCAGAATTTGGAGAGTTTGTTACTAAAGGGGTGACAAGTTGGAGGCAAAGGGCCAGATCTAAAAGATCAA
AGCGGAAACTGAGACAGCCTGCCATTGTCCCATTAGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGCGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCGTAAACCTATTCTGTTTAGTTAAGACTCTGGATGCCAGTAAATGTTATGATTCTTCCTTTAAGGTTTACAAATGGATGATTTTCATTTTACTCCTAAAGTTATC
ATCCAGCATCTTATGTCCAACAATTAGCTCTAAAGTCTTATACCTAGAAATTATTGTTGTCACCATAATGCGAGATAAAATGCGGGAGAATGTGACAAAGTCACCCTTCT
TTCAAGTTGTCTTTAATGAATTGATGGTTGGTGAATGTATCGAGCAGGTGGGAAGGATTTCGTTTTATGCAAAAGTTACATTCACTTGGGGCCTCCTTGAAATAGGCCTT
GAAATCTTGGAATGTATGGGGATATTAGGATCAAGAAGCAGGAAGGTTCCAAAGCAGCAAGAGATCTTGAGGAAGGTTAAGTTTCTAGATAGGCTTGAAAAGGAGGCCTC
TCTTGCAGAGGTTTTCGAAGATGAGCGAGCCTATCTAAAGGCAGAATTTGGAGAGTTTGTTACTAAAGGGGTGACAAGTTGGAGGCAAAGGGCCAGATCTAAAAGATCAA
AGCGGAAACTGAGACAGCCTGCCATTGTCCCATTAGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGCGGTTAGATCATTTGGTATAATCCTCCTCTTGTGCTAGTG
TACGGATTGTAGCTTCAATATCAGCATTCAGCTAGCTTCTCCTTTTTCTTCCTTTGGATTTAAAATTCAGAGCCTTAGAACAAACTAAGATGGAGAATAATTATTTCTTT
GTTATATGTAGTTGATGATAGAGATGATTGTGATTTAAAACGAGGTGTTACCTTTTTATTGTCATCATGTGTTAATCTTAGGATGTGTTTGGT
Protein sequenceShow/hide protein sequence
MPVNLFCLVKTLDASKCYDSSFKVYKWMIFILLLKLSSSILCPTISSKVLYLEIIVVTIMRDKMRENVTKSPFFQVVFNELMVGECIEQVGRISFYAKVTFTWGLLEIGL
EILECMGILGSRSRKVPKQQEILRKVKFLDRLEKEASLAEVFEDERAYLKAEFGEFVTKGVTSWRQRARSKRSKRKLRQPAIVPLAYAKVMKKLNFCG