CuGenDBv2

Gene ID	LsiUNG000810
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	50S ribosomal protein L35
Genome location	chr00:2463458..2464563
RNA-Seq Expression	LsiUNG000810
Synteny	LsiUNG000810
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR037229 - Ribosomal protein L35 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0068151.1 50S ribosomal protein L35 [Cucumis melo var. makuwa]

9.0e-63

93.57

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Query:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS
        MLRWC KLRSAAAKPSQIV SVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA  QTHSPLAAYQCIRSS LPLSVVQVRHVSSRDRR KRKPTTPATS
Subjt:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS

Query:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSKV
        KLKKTKLK YSSYKSRFW+MKDGSIKRRMEGKRHNAHSK+
Subjt:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSKV

XP_004144409.1 uncharacterized protein LOC101219338 [Cucumis sativus]

1.8e-63

94.24

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Query:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS
        MLR C KLRSAAAKPSQI+NSVSSTRRIFHSAPSLYQPLHFS NNLNSRSLFNAS QTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRR KRKPTTPATS
Subjt:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS

Query:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK
        KLKKTKLK YSSYKSRFW+MKDGSIKRRMEGKRHNAHSK
Subjt:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK

XP_008460439.1 PREDICTED: uncharacterized protein LOC103499252 [Cucumis melo]

1.2e-62

94.24

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Query:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS
        MLRWC KLRSAAAKPSQIV SVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA  QTHSPLAAYQCIRSS LPLSVVQVRHVSSRDRR KRKPTTPATS
Subjt:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS

Query:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK
        KLKKTKLK YSSYKSRFW+MKDGSIKRRMEGKRHNAHSK
Subjt:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK

XP_022156090.1 uncharacterized protein LOC111023059 [Momordica charantia]

5.8e-62

89.21

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Query:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS
        MLRWC KLRSAAAKPSQ+V+SVSSTRRIFHS+PSLYQPLHF+PNNL+SRS+FNASLQTHS LAAYQCIRSSPLPLSVVQVRHVSSR+RRK+RKP TP TS
Subjt:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS

Query:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK
        KLKKTK+KFYSSYKSRFWMMKDGSIKRR EGKRHNAH K
Subjt:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK

XP_038887770.1 uncharacterized protein LOC120077803 [Benincasa hispida]

1.1e-63

94.24

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Query:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS
        MLRWC KLRSAAAKPSQIVNS SSTRRIFHS+ SLYQPLHFSPNNLNSRSLFNAS QTHSPLAAYQCIRSS LPLSVVQVRHVSSRDRRKKRK TTP TS
Subjt:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS

Query:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK
        KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK
Subjt:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LBT5 Uncharacterized protein

8.8e-64

94.24

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Query:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS
        MLR C KLRSAAAKPSQI+NSVSSTRRIFHSAPSLYQPLHFS NNLNSRSLFNAS QTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRR KRKPTTPATS
Subjt:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS

Query:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK
        KLKKTKLK YSSYKSRFW+MKDGSIKRRMEGKRHNAHSK
Subjt:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK

A0A1S3CDR4 uncharacterized protein LOC103499252

5.7e-63

94.24

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Query:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS
        MLRWC KLRSAAAKPSQIV SVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA  QTHSPLAAYQCIRSS LPLSVVQVRHVSSRDRR KRKPTTPATS
Subjt:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS

Query:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK
        KLKKTKLK YSSYKSRFW+MKDGSIKRRMEGKRHNAHSK
Subjt:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK

A0A5A7VRB4 50S ribosomal protein L35

4.4e-63

93.57

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Query:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS
        MLRWC KLRSAAAKPSQIV SVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA  QTHSPLAAYQCIRSS LPLSVVQVRHVSSRDRR KRKPTTPATS
Subjt:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS

Query:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSKV
        KLKKTKLK YSSYKSRFW+MKDGSIKRRMEGKRHNAHSK+
Subjt:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSKV

A0A6J1DPB8 uncharacterized protein LOC111023059

2.8e-62

89.21

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Query:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS
        MLRWC KLRSAAAKPSQ+V+SVSSTRRIFHS+PSLYQPLHF+PNNL+SRS+FNASLQTHS LAAYQCIRSSPLPLSVVQVRHVSSR+RRK+RKP TP TS
Subjt:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS

Query:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK
        KLKKTK+KFYSSYKSRFWMMKDGSIKRR EGKRHNAH K
Subjt:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK

A0A6J1KAA4 uncharacterized protein LOC111491530

1.6e-57

85.61

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Query:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS
        MLRWC KLRSAAAKPSQIV+SVSSTRRIFHS PSLYQPLHFSPNNL+SRSL NASLQTHS LAAYQCIRSS  PL  VQVRHVSSR+R+K+RKP TP TS
Subjt:  MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATS

Query:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK
        KLKKTK+KFYSSYKSRFW+ KDGSIKRR EGKRHNAH K
Subjt:  KLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G45590.1 Ribosomal protein L35

9.7e-15

36.91

Show/hide

Query:  MLRWCVKLRSAAAKPSQIVNSV-SSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAA-----YQCIRSSPLPLSVVQVRHVSSRDR----RK
        M R+C KLRS + + ++ ++   +S  R+ H +PS     H +   L      N++  +  P A         + ++ +P   VQVR+++S+++    +K
Subjt:  MLRWCVKLRSAAAKPSQIVNSV-SSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAA-----YQCIRSSPLPLSVVQVRHVSSRDR----RK

Query:  KRKPTTPATSKLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK
        K +P TP TSK+KK K+KFYSS+K RF  + DG+I+R  EGKRHNAH K
Subjt:  KRKPTTPATSKLKKTKLKFYSSYKSRFWMMKDGSIKRRMEGKRHNAHSK

Sequences

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CDS sequence

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ATGCTCAGGTGGTGCGTCAAGCTCCGATCTGCGGCGGCGAAGCCATCTCAAATTGTAAATTCCGTTTCTTCCACCCGCAGGATCTTTCACTCTGCTCCATCACTATACCA
GCCCCTCCATTTCTCTCCGAATAATTTGAATTCCAGGTCCCTTTTCAATGCATCTCTGCAGACTCATTCTCCACTTGCGGCTTATCAGTGTATTCGGTCTTCGCCCTTGC
CTCTCTCTGTTGTTCAAGTGCGGCATGTTTCATCAAGAGACCGACGGAAGAAGAGAAAGCCGACGACGCCAGCCACTTCCAAATTGAAGAAAACTAAACTGAAATTTTAC
TCATCTTACAAGTCTAGGTTTTGGATGATGAAGGATGGGAGCATTAAACGTCGAATGGAAGGGAAAAGGCACAATGCACATTCCAAGGTTTGTCTTTCTGTTCATCAAAT
ATTCTCCGTGTTCTCAGCTAGACGTTTAAATTGTACCACATGTTTAATTGATGCATTGTATTGTTTATCTTATAACAACTTTCTGAGATAG

mRNA sequence

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TGGAAAGGCGCCAACAATTCGCCGACCGCAGGTTTCTGTGTGAAAAATTCCCCCCTACCTTCGCCCTTCGAGTACGACGGCGACGACGATGCTCAGGTGGTGCGTCAAGC
TCCGATCTGCGGCGGCGAAGCCATCTCAAATTGTAAATTCCGTTTCTTCCACCCGCAGGATCTTTCACTCTGCTCCATCACTATACCAGCCCCTCCATTTCTCTCCGAAT
AATTTGAATTCCAGGTCCCTTTTCAATGCATCTCTGCAGACTCATTCTCCACTTGCGGCTTATCAGTGTATTCGGTCTTCGCCCTTGCCTCTCTCTGTTGTTCAAGTGCG
GCATGTTTCATCAAGAGACCGACGGAAGAAGAGAAAGCCGACGACGCCAGCCACTTCCAAATTGAAGAAAACTAAACTGAAATTTTACTCATCTTACAAGTCTAGGTTTT
GGATGATGAAGGATGGGAGCATTAAACGTCGAATGGAAGGGAAAAGGCACAATGCACATTCCAAGGTTTGTCTTTCTGTTCATCAAATATTCTCCGTGTTCTCAGCTAGA
CGTTTAAATTGTACCACATGTTTAATTGATGCATTGTATTGTTTATCTTATAACAACTTTCTGAGATAG

Protein sequence

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MLRWCVKLRSAAAKPSQIVNSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNASLQTHSPLAAYQCIRSSPLPLSVVQVRHVSSRDRRKKRKPTTPATSKLKKTKLKFY
SSYKSRFWMMKDGSIKRRMEGKRHNAHSKVCLSVHQIFSVFSARRLNCTTCLIDALYCLSYNNFLR

LsiUNG000810 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome