; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

LsiUNG001040 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsiUNG001040
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription factor IBH1-like 1
Genome locationchr00:2765527..2766039
RNA-Seq ExpressionLsiUNG001040
SyntenyLsiUNG001040
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035130.1 transcription factor IBH1-like [Cucumis melo var. makuwa]1.3e-5883.75Show/hide
Query:  MTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----RRRNKCMKAVAAE
        MTV ERK AIKLSADIALASSRNCATRWSRAVIA SSVDNR+ LVA+GVLGR +CER+KQISN KITRSSWSS KI+KRSRRV    RRRNKCM AV   
Subjt:  MTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----RRRNKCMKAVAAE

Query:  SVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS
        ++A+RLVQ+RTKVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMRFLA+AYNPSSSS
Subjt:  SVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS

TYJ95949.1 transcription factor IBH1-like [Cucumis melo var. makuwa]1.5e-5985Show/hide
Query:  MTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----RRRNKCMKAVAAE
        MTVTERK AIKLSADIALASSRNCATRWSRAVIA SSVDNR+ LVA+GVLGR +CER+KQISN KITRSSWSS KI+KRSRRV    RRRNKCM AV   
Subjt:  MTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----RRRNKCMKAVAAE

Query:  SVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS
        ++A+RLVQKRTKVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMRFLA+AYNPSSSS
Subjt:  SVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS

XP_004149880.1 transcription factor IBH1-like 1 [Cucumis sativus]7.6e-6785.55Show/hide
Query:  MMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----
        MMGLQIYTT+NENMTVTERK AIKLSADIALASSRNCATRWSRAVIA SSVDNR+  VA+GVLGR +CER+KQISN KITRSSWSS KI+KRSRRV    
Subjt:  MMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----

Query:  RRRNKCMKAVAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS
        RRRNKCM AV   ++A+RLVQKRTKVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMRFLATAYNPSSSS
Subjt:  RRRNKCMKAVAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS

XP_008443801.1 PREDICTED: uncharacterized protein LOC103487305 [Cucumis melo]6.4e-6684.39Show/hide
Query:  MMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----
        MMGLQIYTT+NENMTV ERK AIKLSADIALASSRNCATRWSRAVIA SSVDNR+ LVA+GVLGR +CER+KQISN KITRSSWSS KI+KRSRRV    
Subjt:  MMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----

Query:  RRRNKCMKAVAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS
        RRRNKCM AV   ++A+RLVQ+RTKVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMRFLA+AYNPSSSS
Subjt:  RRRNKCMKAVAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS

XP_038879866.1 transcription factor IBH1-like 1 [Benincasa hispida]1.1e-7091.86Show/hide
Query:  MMGLQIYTT-SNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV-RR
        M GLQIYTT SNENMTV ERK AIKLSADIALASSRNCATRWSRAVIASSSVDNR+R VADGVLGRAVCER+KQISNSK+TRSSWSS  ILKRSRRV RR
Subjt:  MMGLQIYTT-SNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV-RR

Query:  RNKCMKAVAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSSS
        RNKCMKA+AAESVAKRLV KRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMR LATAYNPSSSSS
Subjt:  RNKCMKAVAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSSS

TrEMBL top hitse value%identityAlignment
A0A0A0LWQ3 Uncharacterized protein3.7e-6785.55Show/hide
Query:  MMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----
        MMGLQIYTT+NENMTVTERK AIKLSADIALASSRNCATRWSRAVIA SSVDNR+  VA+GVLGR +CER+KQISN KITRSSWSS KI+KRSRRV    
Subjt:  MMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----

Query:  RRRNKCMKAVAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS
        RRRNKCM AV   ++A+RLVQKRTKVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMRFLATAYNPSSSS
Subjt:  RRRNKCMKAVAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS

A0A1S3B8V1 uncharacterized protein LOC1034873053.1e-6684.39Show/hide
Query:  MMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----
        MMGLQIYTT+NENMTV ERK AIKLSADIALASSRNCATRWSRAVIA SSVDNR+ LVA+GVLGR +CER+KQISN KITRSSWSS KI+KRSRRV    
Subjt:  MMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----

Query:  RRRNKCMKAVAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS
        RRRNKCM AV   ++A+RLVQ+RTKVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMRFLA+AYNPSSSS
Subjt:  RRRNKCMKAVAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS

A0A5A7SVT7 Transcription factor IBH1-like6.3e-5983.75Show/hide
Query:  MTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----RRRNKCMKAVAAE
        MTV ERK AIKLSADIALASSRNCATRWSRAVIA SSVDNR+ LVA+GVLGR +CER+KQISN KITRSSWSS KI+KRSRRV    RRRNKCM AV   
Subjt:  MTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----RRRNKCMKAVAAE

Query:  SVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS
        ++A+RLVQ+RTKVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMRFLA+AYNPSSSS
Subjt:  SVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS

A0A5D3BAB1 Transcription factor IBH1-like7.4e-6085Show/hide
Query:  MTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----RRRNKCMKAVAAE
        MTVTERK AIKLSADIALASSRNCATRWSRAVIA SSVDNR+ LVA+GVLGR +CER+KQISN KITRSSWSS KI+KRSRRV    RRRNKCM AV   
Subjt:  MTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRV----RRRNKCMKAVAAE

Query:  SVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS
        ++A+RLVQKRTKVLRGLVPGGEFMDEISLIEETLDY+SALQAQVDVMRFLA+AYNPSSSS
Subjt:  SVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSS

A0A6J1E715 transcription factor IBH1-like 17.7e-5781.25Show/hide
Query:  MGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNK
        MGLQIYTT+N NMTV +RK AIKLSADIALASSRNCATRWSRAVIA +SV + + LVA+GVLGRAVCER+K+ S+SKITRSSWSSRKILKRSRRV RR K
Subjt:  MGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNK

Query:  CMKAVAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLAT
        C K  AAE +AKRLVQKRT+ LRGLVPGGEFMDE+SLIEETLDYI ALQ QVDVMR LAT
Subjt:  CMKAVAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLAT

SwissProt top hitse value%identityAlignment
O80482 Transcription factor bHLH1494.3e-0429.68Show/hide
Query:  TTSNE--NMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKA
        TTSN   +  V+     I+ +AD  LA+S    TRWSRA++AS                  V  ++K+   +K +  +  SRK L  + R++        
Subjt:  TTSNE--NMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKA

Query:  VAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLA
                  V+++ K+L  LVPG   +   +L++E  DYI+AL+ QV  M  LA
Subjt:  VAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLA

Q9M0B9 Transcription factor IBH1-like 11.1e-2344.44Show/hide
Query:  MGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNK
        MGLQI+  S +N +V ERK AIKLSAD+A+AS R   T WSRA+I  ++ ++ N LV   + G     + + + N K+ + +   RKI++RS+++ RR  
Subjt:  MGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNK

Query:  CMKAVAAESVAKRLVQKRTKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRFLATA
           +  A + AKRLV++RT+ LR +VPGGE M +++ L++ETLDYI +LQ QV+VMR +  A
Subjt:  CMKAVAAESVAKRLVQKRTKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRFLATA

Arabidopsis top hitse value%identityAlignment
AT1G09250.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.0e-0529.68Show/hide
Query:  TTSNE--NMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKA
        TTSN   +  V+     I+ +AD  LA+S    TRWSRA++AS                  V  ++K+   +K +  +  SRK L  + R++        
Subjt:  TTSNE--NMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKA

Query:  VAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLA
                  V+++ K+L  LVPG   +   +L++E  DYI+AL+ QV  M  LA
Subjt:  VAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLA

AT2G43060.1 ILI1 binding bHLH 15.7e-0433.33Show/hide
Query:  LGRAVCERMKQISNSKITRSSWSSRKILKRSRR-----VRRRNKCMKAVAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMR
        + RA     +  S + + R+     KI++ SRR      +RR    +A   E  A+R        LR LVPGG  M+   L+EET  YI  L  QV VM+
Subjt:  LGRAVCERMKQISNSKITRSSWSSRKILKRSRR-----VRRRNKCMKAVAAESVAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMR

Query:  FLATAYNP
         L    +P
Subjt:  FLATAYNP

AT4G30410.1 sequence-specific DNA binding transcription factors7.7e-2544.44Show/hide
Query:  MGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNK
        MGLQI+  S +N +V ERK AIKLSAD+A+AS R   T WSRA+I  ++ ++ N LV   + G     + + + N K+ + +   RKI++RS+++ RR  
Subjt:  MGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNK

Query:  CMKAVAAESVAKRLVQKRTKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRFLATA
           +  A + AKRLV++RT+ LR +VPGGE M +++ L++ETLDYI +LQ QV+VMR +  A
Subjt:  CMKAVAAESVAKRLVQKRTKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRFLATA

AT4G30410.2 sequence-specific DNA binding transcription factors7.7e-2544.44Show/hide
Query:  MGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNK
        MGLQI+  S +N +V ERK AIKLSAD+A+AS R   T WSRA+I  ++ ++ N LV   + G     + + + N K+ + +   RKI++RS+++ RR  
Subjt:  MGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNK

Query:  CMKAVAAESVAKRLVQKRTKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRFLATA
           +  A + AKRLV++RT+ LR +VPGGE M +++ L++ETLDYI +LQ QV+VMR +  A
Subjt:  CMKAVAAESVAKRLVQKRTKVLRGLVPGGEFM-DEISLIEETLDYISALQAQVDVMRFLATA

AT5G57780.1 EXPRESSED IN: 18 plant structures5.9e-1742.28Show/hide
Query:  MTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKC-MKAVAAESVA
        + VTERKNAI+LS+D+A+A++RN +T WSRA+I+ S     N+ +A                           R+ILK++R  R +N+C +        A
Subjt:  MTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKC-MKAVAAESVA

Query:  KRLVQKRTKVLRGLVPGGEFMDEIS-LIEETLDYISALQAQVDVMRFLA
        K  V+KRT +L+ LVPGGE +D+   LI ETLDYI  L+AQVDVMR +A
Subjt:  KRLVQKRTKVLRGLVPGGEFMDEIS-LIEETLDYISALQAQVDVMRFLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGGTCTTCAAATATACACAACGTCAAACGAAAACATGACGGTCACCGAGAGAAAAAACGCCATTAAATTATCTGCAGATATAGCTTTAGCCTCCTCCCGAAACTG
CGCCACACGGTGGAGCCGAGCAGTCATCGCCAGCTCCTCCGTCGATAACCGAAACCGCCTGGTGGCCGATGGCGTACTAGGCCGAGCCGTATGCGAAAGGATGAAGCAAA
TCAGCAATTCCAAAATCACGCGAAGTTCATGGAGTAGTAGGAAGATTCTGAAAAGAAGCCGCCGTGTGCGGCGGAGGAATAAATGTATGAAGGCGGTGGCGGCGGAGTCG
GTTGCAAAAAGATTGGTGCAAAAAAGAACGAAAGTGCTACGTGGTTTGGTTCCGGGAGGTGAATTTATGGATGAAATTTCGTTGATTGAAGAAACCCTAGATTACATATC
GGCTCTTCAAGCTCAAGTTGATGTAATGAGGTTTCTTGCAACTGCATACAATCCATCATCATCATCATCATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGGTCTTCAAATATACACAACGTCAAACGAAAACATGACGGTCACCGAGAGAAAAAACGCCATTAAATTATCTGCAGATATAGCTTTAGCCTCCTCCCGAAACTG
CGCCACACGGTGGAGCCGAGCAGTCATCGCCAGCTCCTCCGTCGATAACCGAAACCGCCTGGTGGCCGATGGCGTACTAGGCCGAGCCGTATGCGAAAGGATGAAGCAAA
TCAGCAATTCCAAAATCACGCGAAGTTCATGGAGTAGTAGGAAGATTCTGAAAAGAAGCCGCCGTGTGCGGCGGAGGAATAAATGTATGAAGGCGGTGGCGGCGGAGTCG
GTTGCAAAAAGATTGGTGCAAAAAAGAACGAAAGTGCTACGTGGTTTGGTTCCGGGAGGTGAATTTATGGATGAAATTTCGTTGATTGAAGAAACCCTAGATTACATATC
GGCTCTTCAAGCTCAAGTTGATGTAATGAGGTTTCTTGCAACTGCATACAATCCATCATCATCATCATCATGA
Protein sequenceShow/hide protein sequence
MMGLQIYTTSNENMTVTERKNAIKLSADIALASSRNCATRWSRAVIASSSVDNRNRLVADGVLGRAVCERMKQISNSKITRSSWSSRKILKRSRRVRRRNKCMKAVAAES
VAKRLVQKRTKVLRGLVPGGEFMDEISLIEETLDYISALQAQVDVMRFLATAYNPSSSSS