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LsiUNG001600 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsiUNG001600
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSmall heat shock protein
Genome locationchr00:3612034..3612294
RNA-Seq ExpressionLsiUNG001600
SyntenyLsiUNG001600
Gene Ontology termsGO:0009408 - response to heat (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADU55784.1 HSP25.5 [Citrullus lanatus]4.3e-3495.06Show/hide
Query:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPSGQGTSVERRPGPKRLALDVSPYG
        MASTL SSPSPLLSFKP+PLKKTPPARVTVLPLRV+AEAGAGGDHNKDTSLEVHVNPS QGTSVERRPGPKRLALDVSPYG
Subjt:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPSGQGTSVERRPGPKRLALDVSPYG

KAA0042511.1 small heat shock protein [Cucumis melo var. makuwa]1.0e-2780.68Show/hide
Query:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPS--GQGTSVERRPGPKRLALDVSPYGKSFQY
        MASTL  SPSPLLSFKP+PLKK P  RVTVLPLRV+AEAGA GD++KDTSLEVHVNPS  GQGTSVERRPGPKRLALD+SPY  +F+Y
Subjt:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPS--GQGTSVERRPGPKRLALDVSPYGKSFQY

XP_008437664.1 PREDICTED: small heat shock protein, chloroplastic [Cucumis melo]6.0e-2884.34Show/hide
Query:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPS--GQGTSVERRPGPKRLALDVSPYG
        MASTL  SPSPLLSFKP+PLKK P  RVTVLPLRV+AEAGA GD++KDTSLEVHVNPS  GQGTSVERRPGPKRLALD+SPYG
Subjt:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPS--GQGTSVERRPGPKRLALDVSPYG

XP_022974357.1 small heat shock protein, chloroplastic [Cucurbita maxima]7.1e-2984.34Show/hide
Query:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPSG--QGTSVERRPGPKRLALDVSPYG
        MASTL SS SPLLSFKP+PLKK PP R+T LP RV+AEAGAGGDH+KDTSLEVHVNPSG  QGTSVERRPGPKRLA+DVSPYG
Subjt:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPSG--QGTSVERRPGPKRLALDVSPYG

XP_038875982.1 small heat shock protein, chloroplastic [Benincasa hispida]1.5e-3191.57Show/hide
Query:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPS--GQGTSVERRPGPKRLALDVSPYG
        MASTL SSPSPLLSFKP+PLKKTPPARVTVLP RVKAEAGAG DHNKD SLEVHVNPS  GQGTSVERRPGPKRLALDVSPYG
Subjt:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPS--GQGTSVERRPGPKRLALDVSPYG

TrEMBL top hitse value%identityAlignment
A0A1S3AV56 small heat shock protein, chloroplastic2.9e-2884.34Show/hide
Query:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPS--GQGTSVERRPGPKRLALDVSPYG
        MASTL  SPSPLLSFKP+PLKK P  RVTVLPLRV+AEAGA GD++KDTSLEVHVNPS  GQGTSVERRPGPKRLALD+SPYG
Subjt:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPS--GQGTSVERRPGPKRLALDVSPYG

A0A5A7TLQ6 Small heat shock protein4.9e-2880.68Show/hide
Query:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPS--GQGTSVERRPGPKRLALDVSPYGKSFQY
        MASTL  SPSPLLSFKP+PLKK P  RVTVLPLRV+AEAGA GD++KDTSLEVHVNPS  GQGTSVERRPGPKRLALD+SPY  +F+Y
Subjt:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPS--GQGTSVERRPGPKRLALDVSPYGKSFQY

A0A6J1E6G1 small heat shock protein, chloroplastic4.2e-2780.72Show/hide
Query:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPSG--QGTSVERRPGPKRLALDVSPYG
        MASTL SS SPLLSFKP+PLKK PP R+T LP RV+AE GAGGDH+KDTSLEVHVNPSG  QGTSVERR  PKRLA+DVSPYG
Subjt:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPSG--QGTSVERRPGPKRLALDVSPYG

A0A6J1IA25 small heat shock protein, chloroplastic3.4e-2984.34Show/hide
Query:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPSG--QGTSVERRPGPKRLALDVSPYG
        MASTL SS SPLLSFKP+PLKK PP R+T LP RV+AEAGAGGDH+KDTSLEVHVNPSG  QGTSVERRPGPKRLA+DVSPYG
Subjt:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPSG--QGTSVERRPGPKRLALDVSPYG

H6TB37 HSP25.52.1e-3495.06Show/hide
Query:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPSGQGTSVERRPGPKRLALDVSPYG
        MASTL SSPSPLLSFKP+PLKKTPPARVTVLPLRV+AEAGAGGDHNKDTSLEVHVNPS QGTSVERRPGPKRLALDVSPYG
Subjt:  MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPSGQGTSVERRPGPKRLALDVSPYG

SwissProt top hitse value%identityAlignment
P30222 Small heat shock protein, chloroplastic3.7e-0446.03Show/hide
Query:  PPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVN-----PSGQGTSVERRPGPKRLALDVSPYG
        P ++ +V     +  A A GD NKDTS++VHV+      + QG++VERR  P+R+ALDVSP+G
Subjt:  PPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVN-----PSGQGTSVERRPGPKRLALDVSPYG

Q95661 Small heat shock protein, chloroplastic8.2e-0447.06Show/hide
Query:  KKTPPARVTVLPLR---VKAEAGAGGDHNKDTSLEVHVNP----SGQGTSVERRPGPKRLALDVSPYG
        K + P  V V  +R    +  A A GD NKDTS++VH +     + QGT+VERR  P R+ALDVSP+G
Subjt:  KKTPPARVTVLPLR---VKAEAGAGGDHNKDTSLEVHVNP----SGQGTSVERRPGPKRLALDVSPYG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAACTCTTTACTCTTCTCCTTCACCTCTGTTGTCCTTCAAACCCAAACCCCTTAAGAAAACCCCACCGGCACGAGTCACGGTCCTGCCTCTGAGGGTGAAAGC
TGAGGCTGGAGCCGGTGGCGATCACAACAAAGATACATCTTTGGAGGTGCATGTCAATCCAAGCGGCCAGGGGACGTCCGTGGAGAGGCGGCCGGGGCCCAAGCGGCTGG
CCCTGGACGTTTCACCTTATGGCAAGTCCTTTCAATACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAACTCTTTACTCTTCTCCTTCACCTCTGTTGTCCTTCAAACCCAAACCCCTTAAGAAAACCCCACCGGCACGAGTCACGGTCCTGCCTCTGAGGGTGAAAGC
TGAGGCTGGAGCCGGTGGCGATCACAACAAAGATACATCTTTGGAGGTGCATGTCAATCCAAGCGGCCAGGGGACGTCCGTGGAGAGGCGGCCGGGGCCCAAGCGGCTGG
CCCTGGACGTTTCACCTTATGGCAAGTCCTTTCAATACTAA
Protein sequenceShow/hide protein sequence
MASTLYSSPSPLLSFKPKPLKKTPPARVTVLPLRVKAEAGAGGDHNKDTSLEVHVNPSGQGTSVERRPGPKRLALDVSPYGKSFQY