; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC00g0103 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC00g0103
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold60:968519..968764
RNA-Seq ExpressionMC00g0103
SyntenyMC00g0103
Gene Ontology termsGO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595447.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]6.30e-3882.93Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM
        EALQVFHDMHFS +V DDITF+GVLSACSYT NVK  LEIFNSME KY VEQK EHYACMVDLLGR GKLNE M+LIE MPM
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM

XP_011653842.1 pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Cucumis sativus]4.09e-3782.93Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM
        EAL+VFHDMHFS I+ DD+TFVGVLSACSYT NVK  LEIFNSME KY VEQK EHYACMVDLLGR GKLNE M+LIEKMPM
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM

XP_022158877.1 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like isoform X1 [Momordica charantia]5.04e-4086.59Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM
        EALQVFHDMHFS ++ DDITFVGVLSACSYT NVK  LEIFNSMEPKYHVE+KTEHYACMVDLLGR GKLNE M LIEKMPM
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM

XP_022158883.1 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like isoform X2 [Momordica charantia]3.94e-4086.59Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM
        EALQVFHDMHFS ++ DDITFVGVLSACSYT NVK  LEIFNSMEPKYHVE+KTEHYACMVDLLGR GKLNE M LIEKMPM
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM

XP_022966207.1 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like [Cucurbita maxima]8.33e-3884.15Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM
        EALQVFHDMHFS +V DDITF+GVLSACSYT NVK  LEIFNSME KY VEQKTEHYACMVDLLGR GKLNE M+LIE MPM
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM

TrEMBL top hitse value%identityAlignment
A0A0A0L0T3 DYW_deaminase domain-containing protein2.36e-3782.93Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM
        EAL+VFHDMHFS I+ DD+TFVGVLSACSYT NVK  LEIFNSME KY VEQK EHYACMVDLLGR GKLNE M+LIEKMPM
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM

A0A6J1DX33 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like isoform X12.44e-4086.59Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM
        EALQVFHDMHFS ++ DDITFVGVLSACSYT NVK  LEIFNSMEPKYHVE+KTEHYACMVDLLGR GKLNE M LIEKMPM
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM

A0A6J1DXB5 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like isoform X21.91e-4086.59Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM
        EALQVFHDMHFS ++ DDITFVGVLSACSYT NVK  LEIFNSMEPKYHVE+KTEHYACMVDLLGR GKLNE M LIEKMPM
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM

A0A6J1EAQ8 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like2.72e-3782.93Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM
        EALQVFHDMHFS +V DDITF+GVLSACSYT NVK  LEIFNSME KY VEQK EHYACMVDLLGR GKLNE M+LIE MPM
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM

A0A6J1HMD2 pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like4.03e-3884.15Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM
        EALQVFHDMHFS +V DDITF+GVLSACSYT NVK  LEIFNSME KY VEQKTEHYACMVDLLGR GKLNE M+LIE MPM
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM

SwissProt top hitse value%identityAlignment
Q56XI1 Pentatricopeptide repeat-containing protein At1g09410, mitochondrial2.9e-1450.62Show/hide
Query:  EALQVFHDMHFS-SIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKM
        EAL+VF +M  S S   +++TFV  LSACSY   V+  L+I+ SME  + V+  T HYACMVD+LGR G+ NE M +I+ M
Subjt:  EALQVFHDMHFS-SIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKM

Q9FG85 Pentatricopeptide repeat-containing protein At5g437904.9e-1445.12Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM
        E ++++  +    +V D  TFV  +SACS++  V   L+IFNSM+  Y +E K EHY C+VDLLGR G+L E    I+KMP+
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM

Q9FMA1 Pentatricopeptide repeat-containing protein At5g563101.3e-1445.68Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMP
        EAL +F+ M  + +  +D+TF+ +LSACS+   V +   +FNSM  KY +    EHY CM+DLLGR GKL E   +I+ MP
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMP

Q9FXB9 Pentatricopeptide repeat-containing protein At1g56690, mitochondrial2.6e-1546.25Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKM
        EAL++FH+M  S  + + +T + +L+ACSY   ++  LEIF SME K+ V    EHY+C VD+LGR G++++ M LIE M
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKM

Q9LND4 Pentatricopeptide repeat-containing protein At1g06140, mitochondrial2.0e-1548.78Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM
        EAL  FH M   ++V + +TFV +LSACS++ NVK   + F SM   Y V  + EHYACMVDLLGR G++ E  + I+ MP+
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM

Arabidopsis top hitse value%identityAlignment
AT1G06140.1 Pentatricopeptide repeat (PPR) superfamily protein1.4e-1648.78Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM
        EAL  FH M   ++V + +TFV +LSACS++ NVK   + F SM   Y V  + EHYACMVDLLGR G++ E  + I+ MP+
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM

AT1G09410.1 pentatricopeptide (PPR) repeat-containing protein2.0e-1550.62Show/hide
Query:  EALQVFHDMHFS-SIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKM
        EAL+VF +M  S S   +++TFV  LSACSY   V+  L+I+ SME  + V+  T HYACMVD+LGR G+ NE M +I+ M
Subjt:  EALQVFHDMHFS-SIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKM

AT1G56690.1 Pentatricopeptide repeat (PPR) superfamily protein1.8e-1646.25Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKM
        EAL++FH+M  S  + + +T + +L+ACSY   ++  LEIF SME K+ V    EHY+C VD+LGR G++++ M LIE M
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKM

AT5G43790.1 Pentatricopeptide repeat (PPR) superfamily protein3.5e-1545.12Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM
        E ++++  +    +V D  TFV  +SACS++  V   L+IFNSM+  Y +E K EHY C+VDLLGR G+L E    I+KMP+
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM

AT5G56310.1 Pentatricopeptide repeat (PPR) superfamily protein9.1e-1645.68Show/hide
Query:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMP
        EAL +F+ M  + +  +D+TF+ +LSACS+   V +   +FNSM  KY +    EHY CM+DLLGR GKL E   +I+ MP
Subjt:  EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAAGCATTACAAGTTTTCCATGATATGCATTTTTCAAGTATCGTGTCTGATGATATCACATTTGTTGGAGTTCTTTCAGCATGTAGTTACACTAGGAATGTGAAAATGGA
CCTAGAAATTTTCAATTCCATGGAACCAAAGTATCATGTGGAACAAAAAACAGAACACTATGCATGCATGGTTGATTTGCTTGGTCGAGTTGGTAAGCTAAATGAGGAAA
TGAATTTAATTGAAAAAATGCCAATG
mRNA sequenceShow/hide mRNA sequence
GAAGCATTACAAGTTTTCCATGATATGCATTTTTCAAGTATCGTGTCTGATGATATCACATTTGTTGGAGTTCTTTCAGCATGTAGTTACACTAGGAATGTGAAAATGGA
CCTAGAAATTTTCAATTCCATGGAACCAAAGTATCATGTGGAACAAAAAACAGAACACTATGCATGCATGGTTGATTTGCTTGGTCGAGTTGGTAAGCTAAATGAGGAAA
TGAATTTAATTGAAAAAATGCCAATG
Protein sequenceShow/hide protein sequence
EALQVFHDMHFSSIVSDDITFVGVLSACSYTRNVKMDLEIFNSMEPKYHVEQKTEHYACMVDLLGRVGKLNEEMNLIEKMPM