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MC00g0146 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC00g0146
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold15:399748..400200
RNA-Seq ExpressionMC00g0146
SyntenyMC00g0146
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONH91217.1 hypothetical protein PRUPE_8G099500, partial [Prunus persica]2.78e-1530.46Show/hide
Query:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVW
        W PP     KIN+D A K  +S  G+GVV +N  GE + A +R++   Y   Q E +A +EGL     +D     ++ D+Q+ IN I    + +    + 
Subjt:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVW

Query:  VDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL
        +++++    NF  ++     R  + V H LA  A   N    WI   P WL
Subjt:  VDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL

XP_020426611.1 uncharacterized protein LOC18767185 [Prunus persica]2.56e-1530.46Show/hide
Query:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVW
        W PP     KIN+D A K  +S  G+GVV +N  GE + A +R++   Y   Q E +A +EGL     +D     ++ D+Q+ IN I    + +    + 
Subjt:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVW

Query:  VDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL
        +++++    NF  ++     R  + V H LA  A   N    WI   P WL
Subjt:  VDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL

XP_022142956.1 uncharacterized protein LOC111012950 [Momordica charantia]7.56e-3243.66Show/hide
Query:  WVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVWVDDIHMC
        W+KINVD ACK    RT IG+VC+N+KG+I+ A  R+++ +++PL  E+LA+LEGL L   L++  VQ +SDS   INL++++       NVW++DI + 
Subjt:  WVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVWVDDIHMC

Query:  AINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPN
        A NFID  F+H+ RSS+    R+AS A+  +    W   F N
Subjt:  AINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPN

XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]4.96e-105100Show/hide
Query:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVW
        WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVW
Subjt:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVW

Query:  VDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL
        VDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL
Subjt:  VDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL

XP_035543587.1 uncharacterized protein LOC118347674 [Juglans regia]4.05e-1734.87Show/hide
Query:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQ-EYDPSHQPNV
        W PP PD +K+NVD A      R GIG + ++  G +++A+I   DV  EP+QVE LA+L GL     L +  +QV+SD   +I  + Q   D S    +
Subjt:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQ-EYDPSHQPNV

Query:  WVDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL
        + + I   A +F D +F ++ R ++ V H LA  A +     +W    PN+L
Subjt:  WVDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL

TrEMBL top hitse value%identityAlignment
A0A251MVV4 RNase H domain-containing protein (Fragment)1.34e-1530.46Show/hide
Query:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVW
        W PP     KIN+D A K  +S  G+GVV +N  GE + A +R++   Y   Q E +A +EGL     +D     ++ D+Q+ IN I    + +    + 
Subjt:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVW

Query:  VDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL
        +++++    NF  ++     R  + V H LA  A   N    WI   P WL
Subjt:  VDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL

A0A6J1CNR4 uncharacterized protein LOC1110129503.66e-3243.66Show/hide
Query:  WVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVWVDDIHMC
        W+KINVD ACK    RT IG+VC+N+KG+I+ A  R+++ +++PL  E+LA+LEGL L   L++  VQ +SDS   INL++++       NVW++DI + 
Subjt:  WVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVWVDDIHMC

Query:  AINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPN
        A NFID  F+H+ RSS+    R+AS A+  +    W   F N
Subjt:  AINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPN

A0A6J1DJL6 uncharacterized protein LOC1110217112.40e-105100Show/hide
Query:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVW
        WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVW
Subjt:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVW

Query:  VDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL
        VDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL
Subjt:  VDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL

A0A6J1DZK3 uncharacterized protein LOC1110249686.65e-1535.1Show/hide
Query:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVW
        W PP    VK+N D A  +S   +G+GV+ +    EI+ AM+    +   PL  + LAI EGL L   L +  V V++DS  ++NLI  +     +   W
Subjt:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVW

Query:  VDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL
        V+DI   A +F +I F H+ R S+ V + L    IS     +W   FP WL
Subjt:  VDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL

A0A6P9ELN9 uncharacterized protein LOC1183476741.96e-1734.87Show/hide
Query:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQ-EYDPSHQPNV
        W PP PD +K+NVD A      R GIG + ++  G +++A+I   DV  EP+QVE LA+L GL     L +  +QV+SD   +I  + Q   D S    +
Subjt:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQ-EYDPSHQPNV

Query:  WVDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL
        + + I   A +F D +F ++ R ++ V H LA  A +     +W    PN+L
Subjt:  WVDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.6e-1029.41Show/hide
Query:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLI-SQEYDPSHQPNV
        W  P   WVK N D   +L N R GIG + +N+ G ++    R L      L+ E  A+   +      +   +  +SD+Q  +NL+ S ++ P+ QP  
Subjt:  WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLI-SQEYDPSHQPNV

Query:  WVDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAIS-SNPNKIWISRFPNWL
         ++DI     +F ++ F    R  + V  R+A  +IS SN +    S  P WL
Subjt:  WVDDIHMCAINFIDILFMHIQRSSSNVTHRLASTAIS-SNPNKIWISRFPNWL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGGCTCCTCCTTCTCCTGACTGGGTAAAGATAAACGTAGACACTGCCTGCAAATTATCAAATTCAAGAACAGGAATTGGGGTGGTTTGCCAAAATGACAAAGGAGAAAT
TATTGTTGCAATGATAAGGAAATTAGATGTGTTTTATGAACCTTTGCAAGTTGAGACATTGGCTATTCTTGAGGGTTTATGGCTGACTCAATGTCTCGACCTCATATTTG
TGCAGGTGGACTCCGATTCGCAGAACTCGATCAACCTCATATCGCAGGAGTATGATCCTTCTCACCAACCTAATGTCTGGGTGGATGACATTCACATGTGTGCCATAAAT
TTCATAGATATTCTCTTCATGCATATTCAAAGATCTTCAAGTAATGTTACTCATCGTTTGGCTTCAACTGCAATTTCGTCAAATCCAAACAAAATCTGGATCTCTAGATT
CCCAAATTGGCTT
mRNA sequenceShow/hide mRNA sequence
TGGGCTCCTCCTTCTCCTGACTGGGTAAAGATAAACGTAGACACTGCCTGCAAATTATCAAATTCAAGAACAGGAATTGGGGTGGTTTGCCAAAATGACAAAGGAGAAAT
TATTGTTGCAATGATAAGGAAATTAGATGTGTTTTATGAACCTTTGCAAGTTGAGACATTGGCTATTCTTGAGGGTTTATGGCTGACTCAATGTCTCGACCTCATATTTG
TGCAGGTGGACTCCGATTCGCAGAACTCGATCAACCTCATATCGCAGGAGTATGATCCTTCTCACCAACCTAATGTCTGGGTGGATGACATTCACATGTGTGCCATAAAT
TTCATAGATATTCTCTTCATGCATATTCAAAGATCTTCAAGTAATGTTACTCATCGTTTGGCTTCAACTGCAATTTCGTCAAATCCAAACAAAATCTGGATCTCTAGATT
CCCAAATTGGCTT
Protein sequenceShow/hide protein sequence
WAPPSPDWVKINVDTACKLSNSRTGIGVVCQNDKGEIIVAMIRKLDVFYEPLQVETLAILEGLWLTQCLDLIFVQVDSDSQNSINLISQEYDPSHQPNVWVDDIHMCAIN
FIDILFMHIQRSSSNVTHRLASTAISSNPNKIWISRFPNWL