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MC00g0174 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC00g0174
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold18:221019..221336
RNA-Seq ExpressionMC00g0174
SyntenyMC00g0174
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8659133.1 Mannose-P-dolichol utilization defect 1 protein [Hibiscus syriacus]1.66e-1037.25Show/hide
Query:  SWILTYMKEIEANNSSLLSD-------GNARETNRSSSVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILE
        SW  T +K++  +  SL+ D       GN+ + N  SS W+PPP G++K+N D A  K     G+G + RD  G +  + ++  G    PL+AELLAI  
Subjt:  SWILTYMKEIEANNSSLLSD-------GNARETNRSSSVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILE

Query:  GL
        GL
Subjt:  GL

PRQ37402.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Rosa chinensis]7.68e-1042.67Show/hide
Query:  NARETNRSSSVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILEGLR
        N R  N+    W  PPP W K+N D AC+ +  NSGLGA+ R+E G +  A+A       +P   E LA+ EGLR
Subjt:  NARETNRSSSVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILEGLR

XP_022142956.1 uncharacterized protein LOC111012950 [Momordica charantia]1.78e-1353.45Show/hide
Query:  GWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILEGLR
        GW+KIN DVACKK    + +G +CR+E G I +A ++    YH+PL+AE LA+LEGLR
Subjt:  GWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILEGLR

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]7.57e-1838.53Show/hide
Query:  QSISDSQGRGSWILTYMKEIEANNSSLLSDGNARETNRSS-----SVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLI
        + I D++ R  WILTY+++ +  +   L D   +E   S+     + W+PPP GW+KIN D ACKK    +G+G +CR+E G I +A +      H+PL+
Subjt:  QSISDSQGRGSWILTYMKEIEANNSSLLSDGNARETNRSS-----SVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLI

Query:  AELLAILEG
        AE LA+ +G
Subjt:  AELLAILEG

XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]3.25e-1648.65Show/hide
Query:  NARETNRSSSVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILEGL
        N+ +  +  + W PP P WVKIN D ACK SNS +G+G +C+++ G I  AM +   V++EPL  E LAILEGL
Subjt:  NARETNRSSSVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILEGL

TrEMBL top hitse value%identityAlignment
A0A2P6QT88 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein3.72e-1042.67Show/hide
Query:  NARETNRSSSVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILEGLR
        N R  N+    W  PPP W K+N D AC+ +  NSGLGA+ R+E G +  A+A       +P   E LA+ EGLR
Subjt:  NARETNRSSSVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILEGLR

A0A6A2WIS1 Mannose-P-dolichol utilization defect 1 protein8.03e-1137.25Show/hide
Query:  SWILTYMKEIEANNSSLLSD-------GNARETNRSSSVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILE
        SW  T +K++  +  SL+ D       GN+ + N  SS W+PPP G++K+N D A  K     G+G + RD  G +  + ++  G    PL+AELLAI  
Subjt:  SWILTYMKEIEANNSSLLSD-------GNARETNRSSSVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILE

Query:  GL
        GL
Subjt:  GL

A0A6J1CNR4 uncharacterized protein LOC1110129508.60e-1453.45Show/hide
Query:  GWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILEGLR
        GW+KIN DVACKK    + +G +CR+E G I +A ++    YH+PL+AE LA+LEGLR
Subjt:  GWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILEGLR

A0A6J1CTE3 uncharacterized protein LOC1110145783.66e-1838.53Show/hide
Query:  QSISDSQGRGSWILTYMKEIEANNSSLLSDGNARETNRSS-----SVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLI
        + I D++ R  WILTY+++ +  +   L D   +E   S+     + W+PPP GW+KIN D ACKK    +G+G +CR+E G I +A +      H+PL+
Subjt:  QSISDSQGRGSWILTYMKEIEANNSSLLSDGNARETNRSS-----SVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLI

Query:  AELLAILEG
        AE LA+ +G
Subjt:  AELLAILEG

A0A6J1DJL6 uncharacterized protein LOC1110217111.57e-1648.65Show/hide
Query:  NARETNRSSSVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILEGL
        N+ +  +  + W PP P WVKIN D ACK SNS +G+G +C+++ G I  AM +   V++EPL  E LAILEGL
Subjt:  NARETNRSSSVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILEGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGTCTATTTCAGATTCACAAGGGAGAGGGAGTTGGATTCTTACCTATATGAAAGAAATTGAGGCTAATAACTCGTCTTTGTTGTCTGATGGTAATGCTCGTGAAACCAA
TCGTAGTAGTAGTGTTTGGAATCCCCCTCCTCCTGGGTGGGTTAAGATAAACAGGGATGTGGCATGCAAGAAAAGCAATTCCAACTCTGGATTAGGGGCAATTTGTAGAG
ATGAAGACGGTGGAATTTTTTCTGCAATGGCAAAGAATACAGGAGTGTATCACGAACCTTTAATAGCGGAATTACTGGCAATTCTTGAGGGACTGAGG
mRNA sequenceShow/hide mRNA sequence
CAGTCTATTTCAGATTCACAAGGGAGAGGGAGTTGGATTCTTACCTATATGAAAGAAATTGAGGCTAATAACTCGTCTTTGTTGTCTGATGGTAATGCTCGTGAAACCAA
TCGTAGTAGTAGTGTTTGGAATCCCCCTCCTCCTGGGTGGGTTAAGATAAACAGGGATGTGGCATGCAAGAAAAGCAATTCCAACTCTGGATTAGGGGCAATTTGTAGAG
ATGAAGACGGTGGAATTTTTTCTGCAATGGCAAAGAATACAGGAGTGTATCACGAACCTTTAATAGCGGAATTACTGGCAATTCTTGAGGGACTGAGG
Protein sequenceShow/hide protein sequence
QSISDSQGRGSWILTYMKEIEANNSSLLSDGNARETNRSSSVWNPPPPGWVKINRDVACKKSNSNSGLGAICRDEDGGIFSAMAKNTGVYHEPLIAELLAILEGLR