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MC00g0204 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC00g0204
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA-directed RNA polymerases I, II, and III subunit RPABC5-like
Genome locationscaffold18:1105555..1105662
RNA-Seq ExpressionMC00g0204
SyntenyMC00g0204
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006366 - transcription by RNA polymerase II (biological process)
GO:0042797 - tRNA transcription by RNA polymerase III (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10
IPR023580 - RNA polymerase subunit RPB10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PLY70860.1 hypothetical protein LSAT_9X15080 [Lactuca sativa]1.10e-0663.89Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYNRKTLPLF
        LD LGLVRYCCR+ML+T V+ IE+LL YN    P F
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYNRKTLPLF
THU50869.1 hypothetical protein C4D60_Mb06t24900 [Musa balbisiana]8.67e-0767.65Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYNRKTLP
        LD LGLVRYCCR+ML+T V+ IE+LL YN K  P
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYNRKTLP
XP_006364438.1 PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Solanum tuberosum]3.67e-0775.86Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LDRLGL+RYCCR+ML+T V+FIE+LL YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
XP_007872857.1 DNA-directed RNA polymerase I, II, and III subunit RPABC5 [Pneumocystis murina B123]1.61e-0667.74Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYNRK
        LD+LGL RYCCR+M++T V+ IE+LL YNRK
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYNRK
XP_022157220.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like [Momordica charantia]2.12e-11100Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LDRLGLVRYCCRQMLITTVNFIERLLEYN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
TrEMBL top hitse value%identityAlignment
A0A0E0MDD5 Uncharacterized protein6.66e-0768.75Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYNRKT
        LD LGLVRYCCR+ML+T V+ IE+LL YN++T
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYNRKT
A0A2J6K708 Uncharacterized protein5.32e-0763.89Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYNRKTLPLF
        LD LGLVRYCCR+ML+T V+ IE+LL YN    P F
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYNRKTLPLF
A0A4S8IR62 Uncharacterized protein4.20e-0767.65Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYNRKTLP
        LD LGLVRYCCR+ML+T V+ IE+LL YN K  P
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYNRKTLP
A0A6J1DSH9 DNA-directed RNA polymerases I, II, and III subunit RPABC5-like1.03e-11100Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LDRLGLVRYCCRQMLITTVNFIERLLEYN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
M7NUN3 DNA-directed RNA polymerase I, II, and III subunit RPABC57.78e-0767.74Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYNRK
        LD+LGL RYCCR+M++T V+ IE+LL YNRK
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYNRK
SwissProt top hitse value%identityAlignment
O13877 DNA-directed RNA polymerases I, II, and III subunit RPABC53.4e-0465.52Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LD+LGL RYCCR+M++T V+ IE+LL YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC52.0e-0468.97Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LD L LVRYCCR+ML+T V+ IE+LL YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
Q75BV8 DNA-directed RNA polymerases I, II, and III subunit RPABC57.6e-0462.07Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        L RLGL RYCCR+M++T V+ IE+ L YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 103.4e-0468.97Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LD L LVRYCCR+ML+T V+ IE+LL YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein4.0e-0572.41Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LD LGLVRYCCR+ML+T V+ IE+LL YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit2.4e-0568.97Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LD L LVRYCCR+ML+T V+ IE+LL YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
AT1G61700.1 RNA polymerases N / 8 kDa subunit2.9e-0672.41Show/hide
Query:  LDRLGLVRYCCRQMLITTVNFIERLLEYN
        LD LGLVRYCCR+ML+T V+ IE+LL YN
Subjt:  LDRLGLVRYCCRQMLITTVNFIERLLEYN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGGATCGTCTAGGATTAGTCCGTTATTGTTGTAGGCAAATGCTCATCACGACAGTCAATTTCATTGAGAGGCTTCTTGAGTACAATCGTAAGACTCTCCCGCTA
TTC
mRNA sequenceShow/hide mRNA sequence
TTGGATCGTCTAGGATTAGTCCGTTATTGTTGTAGGCAAATGCTCATCACGACAGTCAATTTCATTGAGAGGCTTCTTGAGTACAATCGTAAGACTCTCCCGCTA
TTC
Protein sequenceShow/hide protein sequence
LDRLGLVRYCCRQMLITTVNFIERLLEYNRKTLPLF