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MC00g0240 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC00g0240
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold99:776838..777028
RNA-Seq ExpressionMC00g0240
SyntenyMC00g0240
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060187.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]4.74e-2581.25Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        NHVIF+SV+S  SHSGLI+QGL I E MTKDFRMPPNLEHRAC++D LSRAGKV+EAYSFYKMM
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

TYK14769.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.47e-2582.81Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        NHVIF+SV+S  SHSGLI+QGL I E MTKDFRMPPNLEHRACI+D LSRAGKV+EAYSFYKMM
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

XP_016899786.1 PREDICTED: pentatricopeptide repeat-containing protein At4g04370 [Cucumis melo]3.49e-2582.81Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        NHVIF+SV+S  SHSGLI+QGL I E MTKDFRMPPNLEHRACI+D LSRAGKV+EAYSFYKMM
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

XP_022159804.1 pentatricopeptide repeat-containing protein At4g04370 [Momordica charantia]3.49e-2582.81Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        NHVIFLSV+S  SHSGL+NQGL I E MT+DF MPPNLEHRACI+D LSRAGKVEEAYSFYKMM
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

XP_038878475.1 pentatricopeptide repeat-containing protein At4g04370 [Benincasa hispida]3.09e-2484.38Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        NHVIFLSV+S  SHSGLI QGL+I E MTKDFRM PNLEHRACIID LSRAGKV+EAYSFYKMM
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

TrEMBL top hitse value%identityAlignment
A0A1S4DUX5 pentatricopeptide repeat-containing protein At4g043701.69e-2582.81Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        NHVIF+SV+S  SHSGLI+QGL I E MTKDFRMPPNLEHRACI+D LSRAGKV+EAYSFYKMM
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

A0A5A7V033 Pentatricopeptide repeat-containing protein2.29e-2581.25Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        NHVIF+SV+S  SHSGLI+QGL I E MTKDFRMPPNLEHRAC++D LSRAGKV+EAYSFYKMM
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

A0A5D3CX33 Pentatricopeptide repeat-containing protein1.68e-2582.81Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        NHVIF+SV+S  SHSGLI+QGL I E MTKDFRMPPNLEHRACI+D LSRAGKV+EAYSFYKMM
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

A0A6J1E522 pentatricopeptide repeat-containing protein At4g043701.69e-2582.81Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        NHVIFLSV+S  SHSGL+NQGL I E MT+DF MPPNLEHRACI+D LSRAGKVEEAYSFYKMM
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

A0A6J1EZ22 pentatricopeptide repeat-containing protein At4g043701.32e-2382.81Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        NHVIFLSV+S  SHSGLINQGL I E MTKDF MP NLEHRACIID LSRAGKVEEAYSFY  M
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

SwissProt top hitse value%identityAlignment
Q1PFQ9 Pentatricopeptide repeat-containing protein At1g28690, mitochondrial7.3e-1045.31Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        N+V FL  +S  SHSGL+++G  I E M +D+ M P +EH ACI+D + RAG + +A+ F + M
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

Q7XJN6 Pentatricopeptide repeat-containing protein At2g407205.6e-1051.61Show/hide
Query:  VIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        V FLS+IS  +HSG + +G +I E M +D+ + PN+EH A ++D L RAG +EEAYSF K M
Subjt:  VIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

Q7Y211 Pentatricopeptide repeat-containing protein At3g57430, chloroplastic9.6e-1043.75Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        N V F+SV +  SHSG++++GL I  +M  D+ + P+ +H AC++D L RAG+++EAY    MM
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

Q9SS97 Putative pentatricopeptide repeat-containing protein At3g015807.3e-1048.44Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        N V FLS++S  SH+GLI++GL I +LM  D+R+ PNLEH A ++D L R G ++ A    K M
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

Q9XE98 Pentatricopeptide repeat-containing protein At4g043709.2e-1353.23Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYK
        NHVIFL+V+S+ SH+G++ QGL I   M +DF + PN EH AC++D L RA ++E+A+ FYK
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYK

Arabidopsis top hitse value%identityAlignment
AT1G28690.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.2e-1145.31Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        N+V FL  +S  SHSGL+++G  I E M +D+ M P +EH ACI+D + RAG + +A+ F + M
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

AT2G40720.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.0e-1151.61Show/hide
Query:  VIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        V FLS+IS  +HSG + +G +I E M +D+ + PN+EH A ++D L RAG +EEAYSF K M
Subjt:  VIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

AT3G01580.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.2e-1148.44Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        N V FLS++S  SH+GLI++GL I +LM  D+R+ PNLEH A ++D L R G ++ A    K M
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

AT3G57430.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.8e-1143.75Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM
        N V F+SV +  SHSG++++GL I  +M  D+ + P+ +H AC++D L RAG+++EAY    MM
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM

AT4G04370.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.6e-1453.23Show/hide
Query:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYK
        NHVIFL+V+S+ SH+G++ QGL I   M +DF + PN EH AC++D L RA ++E+A+ FYK
Subjt:  NHVIFLSVISTSSHSGLINQGLHI-ELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATCATGTTATTTTCCTTTCAGTTATCTCTACTTCTAGTCACAGTGGACTTATTAACCAGGGTTTGCATATCGAGTTAATGACTAAAGATTTCAGAATGCCACCAAATCT
TGAGCACCGAGCTTGCATCATCGACCGCCTTAGTCGAGCTGGAAAGGTTGAAGAGGCATATAGCTTCTATAAAATGATG
mRNA sequenceShow/hide mRNA sequence
AATCATGTTATTTTCCTTTCAGTTATCTCTACTTCTAGTCACAGTGGACTTATTAACCAGGGTTTGCATATCGAGTTAATGACTAAAGATTTCAGAATGCCACCAAATCT
TGAGCACCGAGCTTGCATCATCGACCGCCTTAGTCGAGCTGGAAAGGTTGAAGAGGCATATAGCTTCTATAAAATGATG
Protein sequenceShow/hide protein sequence
NHVIFLSVISTSSHSGLINQGLHIELMTKDFRMPPNLEHRACIIDRLSRAGKVEEAYSFYKMM