CuGenDBv2

Gene ID	MC00g0301
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	30S ribosomal protein S16, chloroplastic
Genome location	scaffold113:55642..55842
RNA-Seq Expression	MC00g0301
Synteny	MC00g0301
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000307 - Ribosomal protein S16 IPR023803 - Ribosomal protein S16 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

Q2QDA6.1 RecName: Full=30S ribosomal protein S16, chloroplastic [Cucumis sativus]

4.87e-40

98.51

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL
        VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTEL L
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

YP_009004027.1 ribosomal protein S16 [Cucumis hystrix]

4.46e-40

98.51

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL
        VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTEL L
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

YP_009526284.1 ribosomal protein S16 [Hemsleya lijiangensis]

4.73e-40

98.51

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL
        VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTEL L
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

YP_009674373.1 ribosomal protein S16 [Siraitia grosvenorii]

4.73e-40

98.51

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL
        VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTEL L
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

YP_009752478.1 ribosomal protein S16 [Trichosanthes tubiflora]

4.73e-40

98.51

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL
        VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTEL L
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

TrEMBL top hits

e value

%identity

Alignment

A0A218KG12 30S ribosomal protein S16, chloroplastic

2.29e-40

98.51

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL
        VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTEL L
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

A0A343UM14 30S ribosomal protein S16, chloroplastic

2.16e-40

98.51

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL
        VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTEL L
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

A0A515BLF3 30S ribosomal protein S16, chloroplastic

2.16e-40

98.51

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL
        VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTEL L
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

A0A6H0ETM9 30S ribosomal protein S16, chloroplastic

2.29e-40

98.51

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL
        VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTEL L
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

W8E1Y8 Ribosomal protein S16

2.16e-40

98.51

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL
        VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTEL L
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

SwissProt top hits

e value

%identity

Alignment

A0ZZ17 30S ribosomal protein S16, chloroplastic

6.8e-30

92.54

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL
        VYRI+ IDVRSRREGRDLRKVGFYDPI NQTYLNVPAILYFLEKGAQPT TVHDILKKAGVFTEL L
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

Q09X35 30S ribosomal protein S16, chloroplastic

5.7e-29

89.55

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL
        +YRI+AIDVRSRREGR LRKVGFYDPIKNQTYLNVP ILYFLEKGAQPTGTVHDI KKAGVF EL+L
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

Q0ZJ38 30S ribosomal protein S16, chloroplastic

4.4e-29

91.04

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL
        VYRI+AID RSRREGRDLRKVGFYDPIKNQTY NVPAILYFLEKGAQPTGTVHDI KKA VFTEL+L
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

Q2L8Y7 30S ribosomal protein S16, chloroplastic

2.3e-30

94.03

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL
        VYRI+AIDVRSRREGRDLRKVGFYDPI NQTYLNVPAILYFLEKGAQPT TVHDILKKAGVFTEL L
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

Q2QDA6 30S ribosomal protein S16, chloroplastic

7.2e-32

98.51

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL
        VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTEL L
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

Arabidopsis top hits

e value

%identity

Alignment

AT4G34620.1 small subunit ribosomal protein 16

6.8e-09

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIK-----NQTYLNVPAILYFLEKGAQPTGTVHDILKKAGV
        YR++  D +SRR+G+ +  +GFYDP++     ++  L    I Y+L  GAQPT TV  +L +AG+
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIK-----NQTYLNVPAILYFLEKGAQPTGTVHDILKKAGV

AT5G56940.1 Ribosomal protein S16 family protein

3.5e-05

33.85

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Query:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQ-----TYLNVPAILYFLEKGAQPTGTVHDILKKAGV
        +R++A D RS R+G+ L  +G+++P+  Q       L    I Y+L  GAQP+  V  +L ++G+
Subjt:  YRIIAIDVRSRREGRDLRKVGFYDPIKNQ-----TYLNVPAILYFLEKGAQPTGTVHDILKKAGV

ATCG00050.1 ribosomal protein S16

3.3e-24

79.69

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Query:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTE
        VYRI+AIDVR RREGRDL KVGFYDPI NQT+LN+ AIL FL+KGAQPT T HDI KKAG+FTE
Subjt:  VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTE

Sequences

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CDS sequence

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GTTTATCGAATCATTGCAATTGATGTTCGATCCCGAAGAGAAGGAAGGGATCTTCGTAAAGTGGGTTTTTATGATCCGATAAAGAATCAAACCTATTTAAATGTTCCTGC
TATTCTATATTTCCTTGAAAAAGGCGCTCAACCTACAGGAACTGTTCATGATATTTTAAAGAAGGCAGGGGTTTTTACGGAACTTCAACTT

mRNA sequence

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Protein sequence

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VYRIIAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILYFLEKGAQPTGTVHDILKKAGVFTELQL

MC00g0301 (gene) of Bitter gourd (Dali-11) v1 genome