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MC00g0366 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC00g0366
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationscaffold7:368775..368930
RNA-Seq ExpressionMC00g0366
SyntenyMC00g0366
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDI73623.1 ribosomal protein S12, 3, partial [Pyrus spinosa]2.50e-2594.23Show/hide
Query:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

KYP43640.1 hypothetical protein KK1_034921, partial [Cajanus cajan]2.05e-2594.23Show/hide
Query:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

RWV89324.1 hypothetical protein GW17_00048527, partial [Ensete ventricosum]1.94e-2594.23Show/hide
Query:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

THU42747.1 hypothetical protein C4D60_Mb00t13930 [Musa balbisiana]1.33e-2594.23Show/hide
Query:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

VVW89850.1 unnamed protein product, partial [Nymphaea colorata]1.74e-2594.23Show/hide
Query:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

TrEMBL top hitse value%identityAlignment
A0A151RM35 Uncharacterized protein (Fragment)9.95e-2694.23Show/hide
Query:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

A0A287NDH3 Uncharacterized protein1.05e-2594.23Show/hide
Query:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

A0A444CTW6 Uncharacterized protein (Fragment)9.41e-2694.23Show/hide
Query:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

A0A4S8I4F5 Uncharacterized protein6.44e-2694.23Show/hide
Query:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

A0A5K1HM42 Uncharacterized protein (Fragment)8.43e-2694.23Show/hide
Query:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

SwissProt top hitse value%identityAlignment
A4QJD9 30S ribosomal protein S12, chloroplastic2.9e-2094.12Show/hide
Query:  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

A4QJM3 30S ribosomal protein S12, chloroplastic2.9e-2094.12Show/hide
Query:  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

A4QJV5 30S ribosomal protein S12-A, chloroplastic2.9e-2094.12Show/hide
Query:  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

A4QJX7 30S ribosomal protein S12-B, chloroplastic9.9e-2194.23Show/hide
Query:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

Q3V510 30S ribosomal protein S12, chloroplastic2.9e-2094.12Show/hide
Query:  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein2.1e-1365.38Show/hide
Query:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        ST TPKKPNSA  K+A+VRL++  +I A+IPG GHN QEHS VL++G RVKD
Subjt:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

ATCG00065.1 ribosomal protein S12A2.1e-2194.12Show/hide
Query:  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

ATCG00905.1 ribosomal protein S12C2.1e-2194.12Show/hide
Query:  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

ATCG01230.1 ribosomal protein S12B2.1e-2194.12Show/hide
Query:  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Subjt:  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

ATMG00980.1 Ribosomal protein S12/S23 family protein2.1e-1365.38Show/hide
Query:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD
        ST TPKKPNSA  K+A+VRL++  +I A+IPG GHN QEHS VL++G RVKD
Subjt:  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCACTATCACCCCCAAAAAACCAAACTCTGCTTTAGGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTT
ACAAGAACATTCTGTAGTCTTAGTAAAAGGGAGAAGGGTTAAGGAC
mRNA sequenceShow/hide mRNA sequence
TCCACTATCACCCCCAAAAAACCAAACTCTGCTTTAGGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTT
ACAAGAACATTCTGTAGTCTTAGTAAAAGGGAGAAGGGTTAAGGAC
Protein sequenceShow/hide protein sequence
STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD