; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC00g0479 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC00g0479
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRibosomal protein S3
Genome locationscaffold196:266192..266601
RNA-Seq ExpressionMC00g0479
SyntenyMC00g0479
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR044954 - Ribosomal protein S3, mitochondrial, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADL63826.1 ribosomal protein S3, partial [Datisca cannabina]9.83e-7386.3Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----
        LAEAKKRLTHFIRQANDLRFAGTTKTTIS FPFFGATFFFPR+ VGMYKN FFEDTREQLLGQLRIKCWNLMGK KVIE I+KFIDLGGI ELIKG    
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----

Query:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
             RNRRIPYGYNSYLNE KKM+SLLSNRT TNTLIESVKIKSV
Subjt:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV

ADL63932.1 ribosomal protein S3, partial [Lophozonia moorei]3.93e-7384.93Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----
        LAEAKKRLTHFIRQANDLRFAGTTKTTIS FPFFGATFFFPR+EVGMY N FFED REQLLGQLRIKCWNLMGK +V+ELI+KFIDLGGI ELIKG    
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----

Query:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
             RNRRIPYGYNSYLNE KKM+SLLSNRTKTNTLIES+KIKSV
Subjt:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV

WP_165001735.1 hypothetical protein [Candidatus Frankia datiscae]1.84e-7285.62Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----
        LAEAKKRLTHFIRQANDLRFAGTTKTTIS FPFFGATFFFPR+ VGMYKN FFEDTREQLLGQLRIKCWNLMGK KVIELI K IDLGGI E IKG    
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----

Query:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
             RNRRIPYGYNSYLNE KKM+SLLSNRT TNTLIESVKIKSV
Subjt:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV

YP_003587231.1 ribosomal protein S3 [Citrullus lanatus]1.01e-7387.67Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----
        LAEAKKRLTHFIRQANDLRFAGTTKTTIS FPFFGATFFFPR+ VGMYKN FFEDTREQLLGQLRIKCWNLMGK KVIELI+KFIDLGGI ELIKG    
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----

Query:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
             RNRRIPYGYNSYLNE KKM+SLLSNRTKTNTLIESVKIKSV
Subjt:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV

YP_009913654.1 ribosomal protein S3 [Luffa acutangula]9.65e-7487.67Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----
        LAEAKKRLTHFIRQANDLRFAGTTKTTIS FPFFGATFFFPR+ VGMYKN FFEDTREQLLGQLRIKCWNLMGK KVIELI+KFIDLGGI ELIKG    
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----

Query:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
             RNRRIPYGYNSYLNE KKM+SLLSNRTKTNTLIESVKIKSV
Subjt:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV

TrEMBL top hitse value%identityAlignment
A0A7D6C3M1 Ribosomal protein S34.67e-7487.67Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----
        LAEAKKRLTHFIRQANDLRFAGTTKTTIS FPFFGATFFFPR+ VGMYKN FFEDTREQLLGQLRIKCWNLMGK KVIELI+KFIDLGGI ELIKG    
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----

Query:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
             RNRRIPYGYNSYLNE KKM+SLLSNRTKTNTLIESVKIKSV
Subjt:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV

D5I3A1 Ribosomal protein S34.89e-7487.67Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----
        LAEAKKRLTHFIRQANDLRFAGTTKTTIS FPFFGATFFFPR+ VGMYKN FFEDTREQLLGQLRIKCWNLMGK KVIELI+KFIDLGGI ELIKG    
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----

Query:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
             RNRRIPYGYNSYLNE KKM+SLLSNRTKTNTLIESVKIKSV
Subjt:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV

E5DM08 Ribosomal protein S3 (Fragment)4.76e-7386.3Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----
        LAEAKKRLTHFIRQANDLRFAGTTKTTIS FPFFGATFFFPR+ VGMYKN FFEDTREQLLGQLRIKCWNLMGK KVIE I+KFIDLGGI ELIKG    
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----

Query:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
             RNRRIPYGYNSYLNE KKM+SLLSNRT TNTLIESVKIKSV
Subjt:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV

E5DMB4 Ribosomal protein S3 (Fragment)1.90e-7384.93Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----
        LAEAKKRLTHFIRQANDLRFAGTTKTTIS FPFFGATFFFPR+EVGMY N FFED REQLLGQLRIKCWNLMGK +V+ELI+KFIDLGGI ELIKG    
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----

Query:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
             RNRRIPYGYNSYLNE KKM+SLLSNRTKTNTLIES+KIKSV
Subjt:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV

E5FJD9 Ribosomal protein S3 (Fragment)3.16e-7282.19Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----
        L+EAKKRLTHFIRQ NDLRFAGTTKTTIS FPFFGATFFFPR+ VG+Y N FFED REQLLGQLRIKCWNLMGK KV+ELI+KFI+LGGI ELIKG    
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----

Query:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
             RNRRIPYGYNSYLNE KKM+SLLSNRT TNTLIESVKIKSV
Subjt:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV

SwissProt top hitse value%identityAlignment
P27754 Ribosomal protein S3, mitochondrial3.8e-5680.14Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----
        LAE KK L HFIRQ NDLRFAG TKTTIS FPFFGATFFFPR+ VG+YK+ FFED REQLLGQLRIKCW LMGK KV+ELI+KFIDLGGI ELIKG    
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----

Query:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
             RNRRIPYGYNSYLNE KKM+SLLSNRTKTNT+IESVKIKSV
Subjt:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV

P27928 Ribosomal protein S3, mitochondrial9.8e-5276.71Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----
        LA AKKRL HFIRQANDLRFAGTTKTTIS FPFFGATFFF R+ VG+Y N F+E  REQLLGQLRIKC NLMGK KV+ELI+KFIDLG I +LIKG    
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----

Query:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
             R RRIPYGYNSYLNE +KM+S LSNRT TNTLIESVKIKSV
Subjt:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV

P46773 Ribosomal protein S3, mitochondrial4.9e-5176.71Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----
        LA AKKRL HFIRQANDLRFAGTTKTTIS FPFFGATFFFPR+ VG+Y N FFE  REQLLGQLRIKC NLMGK KV+ELI+KFI LG I +LIKG    
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----

Query:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
             R R IPYGYNSYLNE +KM+S LSNRT TNTLIESVKIKSV
Subjt:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV

P49386 Ribosomal protein S3, mitochondrial5.6e-4771.72Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKNFFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG-----
        LAEAK RLTH IR ANDL FAGTTKTTIS FPFFGATFFF R+ VG+  N   D REQLL QLR+KCWNL+GK KV+ELI+KF DLGGIEELIK      
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKNFFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG-----

Query:  ----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
            R R IPYGYNSY NE +KM+S LSNRT T TLIESVKIKSV
Subjt:  ----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV

Q04716 Ribosomal protein S3, mitochondrial1.9e-5579.45Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----
        LAEAKKR+THFIRQANDLRFAGTTKTTIS FPFFGATFFFPR+ VG+Y N FFED REQLLGQLR KCWNLMGK KV+ELI+KFIDL  I ELI+G    
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKN-FFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG----

Query:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
             RNRRIPYGYN YLNE KKM+SLL NRT TNTLIESVKIKSV
Subjt:  -----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV

Arabidopsis top hitse value%identityAlignment
ATMG00090.1 structural constituent of ribosome;protein binding8.8e-4871.03Show/hide
Query:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKNFFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG-----
        LAEAK RLTHFIR ANDLRFAGTTKTTIS FPFFGATFFF R+ VG+Y N   D REQLL QLR+KCWNL+GK K++ELI+K  +LGGIEELIK      
Subjt:  LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKNFFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKG-----

Query:  ----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV
            R R IPY YNSY  E KKM+S LSNRT T TLIESVKIKSV
Subjt:  ----RNRRIPYGYNSYLNEGKKMQSLLSNRTKTNTLIESVKIKSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGGCCGAAGCCAAAAAGAGGTTGACCCACTTCATTCGCCAAGCGAATGATCTTCGTTTCGCGGGAACAACAAAGACAACCATCTCGCGCTTTCCTTTCTTCGGTGCTAC
CTTTTTCTTTCCAAGGGAGGAGGTTGGGATGTATAAAAACTTTTTTGAGGATACCCGGGAACAACTCCTAGGTCAATTAAGGATCAAATGTTGGAACCTCATGGGTAAGT
ATAAGGTAATAGAATTGATACAGAAATTCATAGACCTAGGTGGGATAGAAGAATTGATAAAGGGAAGAAACAGAAGAATTCCGTATGGGTACAACTCTTATTTGAACGAA
GGGAAAAAAATGCAATCTTTGTTGTCTAATAGAACAAAAACTAATACCTTAATTGAGTCCGTCAAGATCAAATCTGTA
mRNA sequenceShow/hide mRNA sequence
TTGGCCGAAGCCAAAAAGAGGTTGACCCACTTCATTCGCCAAGCGAATGATCTTCGTTTCGCGGGAACAACAAAGACAACCATCTCGCGCTTTCCTTTCTTCGGTGCTAC
CTTTTTCTTTCCAAGGGAGGAGGTTGGGATGTATAAAAACTTTTTTGAGGATACCCGGGAACAACTCCTAGGTCAATTAAGGATCAAATGTTGGAACCTCATGGGTAAGT
ATAAGGTAATAGAATTGATACAGAAATTCATAGACCTAGGTGGGATAGAAGAATTGATAAAGGGAAGAAACAGAAGAATTCCGTATGGGTACAACTCTTATTTGAACGAA
GGGAAAAAAATGCAATCTTTGTTGTCTAATAGAACAAAAACTAATACCTTAATTGAGTCCGTCAAGATCAAATCTGTA
Protein sequenceShow/hide protein sequence
LAEAKKRLTHFIRQANDLRFAGTTKTTISRFPFFGATFFFPREEVGMYKNFFEDTREQLLGQLRIKCWNLMGKYKVIELIQKFIDLGGIEELIKGRNRRIPYGYNSYLNE
GKKMQSLLSNRTKTNTLIESVKIKSV