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MC00g0530 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC00g0530
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionribosomal RNA small subunit methyltransferase nep-1-like
Genome locationscaffold157:243531..245799
RNA-Seq ExpressionMC00g0530
SyntenyMC00g0530
Gene Ontology termsGO:0070475 - rRNA base methylation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0019843 - rRNA binding (molecular function)
GO:0070037 - rRNA (pseudouridine) methyltransferase activity (molecular function)
InterPro domainsIPR005304 - Ribosomal biogenesis, methyltransferase, EMG1/NEP1
IPR029026 - tRNA (guanine-N1-)-methyltransferase, N-terminal
IPR029028 - Alpha/beta knot methyltransferases


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3456600.1 hypothetical protein FNV43_RR01254 [Rhamnella rubrinervis]1.09e-2262.96Show/hide
Query:  VIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSRM--AGMVQAVFVKTDDGVLIRVDP
        VI  L+KASL LA VG+ YQILN E+H  FL RK MDPYKYRPDIVHE L +I  SR+  AG ++AV++KTD G+LI+V+P
Subjt:  VIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSRM--AGMVQAVFVKTDDGVLIRVDP

TYK19496.1 ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo var. makuwa]9.20e-3580Show/hide
Query:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSR--MAGMVQAVFVKTDDGVLIRVDP
        MK RV   L+KASLTLA VGKNY ILNQEKH  FL RKRMDPYKYRPDIVHE LVHIMYSR  MAG+VQAVFV+TD+GVLI+VDP
Subjt:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSR--MAGMVQAVFVKTDDGVLIRVDP

XP_008448880.1 PREDICTED: ribosomal RNA small subunit methyltransferase NEP1-like [Cucumis melo]2.74e-3580Show/hide
Query:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSR--MAGMVQAVFVKTDDGVLIRVDP
        MK RV   L+KASLTLA VGKNY ILNQEKH  FL RKRMDPYKYRPDIVHE LVHIMYSR  MAG+VQAVFV+TD+GVLI+VDP
Subjt:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSR--MAGMVQAVFVKTDDGVLIRVDP

XP_022150056.1 ribosomal RNA small subunit methyltransferase NEP1-like [Momordica charantia]1.84e-3478.82Show/hide
Query:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSR--MAGMVQAVFVKTDDGVLIRVDP
        MKSRVI  LDKASLTLALVGK YQILNQEKH +FL +KRMDPY+YRPDI+HE LVHIM+SR  MAG+V+AVF+KTD G+LIRVDP
Subjt:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSR--MAGMVQAVFVKTDDGVLIRVDP

XP_038891590.1 uncharacterized protein LOC120080981 [Benincasa hispida]1.97e-2668.18Show/hide
Query:  KSRVIVALDKASLTLALVG------KNYQILNQEKHVNFLGRKRMDPYKYRPDIVH-ELVHIMYSR--MAGMVQAVFVKTDDGVLIRV
        KSRVI  L+KASLTLA +       +NY ILNQEK V FL RKRMD YKY+PDIVH  LVHIMYSR  MAG+VQAVF++TD+GVLI+V
Subjt:  KSRVIVALDKASLTLALVG------KNYQILNQEKHVNFLGRKRMDPYKYRPDIVH-ELVHIMYSR--MAGMVQAVFVKTDDGVLIRV

TrEMBL top hitse value%identityAlignment
A0A1S3BLD0 ribosomal RNA small subunit methyltransferase NEP1-like1.33e-3580Show/hide
Query:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSR--MAGMVQAVFVKTDDGVLIRVDP
        MK RV   L+KASLTLA VGKNY ILNQEKH  FL RKRMDPYKYRPDIVHE LVHIMYSR  MAG+VQAVFV+TD+GVLI+VDP
Subjt:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSR--MAGMVQAVFVKTDDGVLIRVDP

A0A5D3D7D3 Ribosomal RNA small subunit methyltransferase NEP1-like4.45e-3580Show/hide
Query:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSR--MAGMVQAVFVKTDDGVLIRVDP
        MK RV   L+KASLTLA VGKNY ILNQEKH  FL RKRMDPYKYRPDIVHE LVHIMYSR  MAG+VQAVFV+TD+GVLI+VDP
Subjt:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSR--MAGMVQAVFVKTDDGVLIRVDP

A0A6J1DAB0 ribosomal RNA small subunit methyltransferase NEP1-like8.89e-3578.82Show/hide
Query:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSR--MAGMVQAVFVKTDDGVLIRVDP
        MKSRVI  LDKASLTLALVGK YQILNQEKH +FL +KRMDPY+YRPDI+HE LVHIM+SR  MAG+V+AVF+KTD G+LIRVDP
Subjt:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSR--MAGMVQAVFVKTDDGVLIRVDP

A0A6J5TVM6 Uncharacterized protein8.63e-2360Show/hide
Query:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSRM--AGMVQAVFVKTDDGVLIRVDP
        M  RV   L+KASL  A VG+ YQ+LN + H +FL RK+MDPYKYRPDIVHE L  IM +R+  AG +QAV++KTD+GVLI+V+P
Subjt:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSRM--AGMVQAVFVKTDDGVLIRVDP

A0A6J5WCX0 Uncharacterized protein5.69e-2361.18Show/hide
Query:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSRM--AGMVQAVFVKTDDGVLIRVDP
        M  RV   L+KASL  A VG+ YQILN + H +FL RK+MDPYKYRPDIVHE L  IM +R+  AG +QAV++KTD+GVLI+V+P
Subjt:  MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSRM--AGMVQAVFVKTDDGVLIRVDP

SwissProt top hitse value%identityAlignment
O35130 Ribosomal RNA small subunit methyltransferase NEP16.8e-0842.68Show/hide
Query:  RVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSRM--AGMVQAVFVKTDDGVLIRVDP
        R+IV L+ ASL    VGK Y++LN ++H + L +   DP + RPDI H+ L+ +M S +  AG++Q V++ T   VLI V+P
Subjt:  RVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSRM--AGMVQAVFVKTDDGVLIRVDP

Q92979 Ribosomal RNA small subunit methyltransferase NEP14.0e-0843.9Show/hide
Query:  RVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSRM--AGMVQAVFVKTDDGVLIRVDP
        R+IV L+ ASL    VGK Y++LN +KH + L +   DP + RPDI H+ L+ +M S +  AG++Q V++ T   VLI V+P
Subjt:  RVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSRM--AGMVQAVFVKTDDGVLIRVDP

Q9XX15 Ribosomal RNA small subunit methyltransferase nep-12.3e-0841.67Show/hide
Query:  KSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSRM--AGMVQAVFVKTDDGVLIRVDP
        K  + V L+  SL  A VG  Y IL+ +KH NFL +++ DP  YRPDI+H+ L++++ S +  AG ++ VF +T   VL+ V P
Subjt:  KSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYSRM--AGMVQAVFVKTDDGVLIRVDP

Arabidopsis top hitse value%identityAlignment
AT3G57000.1 nucleolar essential protein-related2.2e-1447.62Show/hide
Query:  KSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYS--RMAGMVQAVFVKTDDGVLIRVDP
        KS ++  L+KASL +A VGK YQ+LN + H NFL +   +P  YRPDI H+ L+ I+ S    AG ++AV+V+T+ GVL  V P
Subjt:  KSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHE-LVHIMYS--RMAGMVQAVFVKTDDGVLIRVDP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCTAGGGTCATTGTTGCACTTGACAAGGCTTCTTTGACACTTGCCCTTGTTGGAAAGAACTATCAGATTTTGAATCAAGAAAAACATGTTAATTTCTTGGGAAG
GAAGAGAATGGATCCATACAAGTATAGACCTGATATAGTTCATGAGTTGGTCCATATTATGTATTCTCGAATGGCGGGAATGGTTCAAGCCGTGTTCGTTAAAACTGATG
ATGGAGTTCTCATCAGAGTTGATCCA
mRNA sequenceShow/hide mRNA sequence
ATGAAATCTAGGGTCATTGTTGCACTTGACAAGGCTTCTTTGACACTTGCCCTTGTTGGAAAGAACTATCAGATTTTGAATCAAGAAAAACATGTTAATTTCTTGGGAAG
GAAGAGAATGGATCCATACAAGTATAGACCTGATATAGTTCATGAGTTGGTCCATATTATGTATTCTCGAATGGCGGGAATGGTTCAAGCCGTGTTCGTTAAAACTGATG
ATGGAGTTCTCATCAGAGTTGATCCA
Protein sequenceShow/hide protein sequence
MKSRVIVALDKASLTLALVGKNYQILNQEKHVNFLGRKRMDPYKYRPDIVHELVHIMYSRMAGMVQAVFVKTDDGVLIRVDP