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MC00g0643 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC00g0643
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold191:114134..114374
RNA-Seq ExpressionMC00g0643
SyntenyMC00g0643
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.41e-1240.74Show/hide
Query:  SMKFNLAVSQGIYTGF----FTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI
        S+K +L+ +    T F    +   W +  PKK CKF IW ++H  +NT ++LQ+R P +  +PNWC +C +SQE ++HLFI
Subjt:  SMKFNLAVSQGIYTGF----FTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.38e-1340.74Show/hide
Query:  SVKSMKFNLAVSQG-IYTGFFTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI
        SVK +     VS    +   +   W +  PKK CKF IW ++H  +NT ++LQ+R P +  +PNWC +C +SQE ++HLFI
Subjt:  SVKSMKFNLAVSQG-IYTGFFTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.41e-1240.74Show/hide
Query:  SMKFNLAVSQGIYTGF----FTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI
        S+K +L+ +    T F    +   W +  PKK CKF IW ++H  +NT ++LQ+R P +  +PNWC +C +SQE ++HLFI
Subjt:  SMKFNLAVSQGIYTGF----FTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI

TYK10888.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]6.01e-1347.46Show/hide
Query:  NFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYPFLC-NPNWCVLCQRSQESLDHLFI
        + W   +P+K CKF IW ++H+ LNT + +Q+R P +C NPNWC+ C+ S E ++HLFI
Subjt:  NFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYPFLC-NPNWCVLCQRSQESLDHLFI

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.31e-1340.74Show/hide
Query:  SVKSMKFNLAVSQG-IYTGFFTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI
        SVK +     VS    +   +   W +  PKK CKF IW ++H  +NT ++LQ+R P +  +PNWC +C +SQE ++HLFI
Subjt:  SVKSMKFNLAVSQG-IYTGFFTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI

TrEMBL top hitse value%identityAlignment
A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein6.84e-1340.74Show/hide
Query:  SMKFNLAVSQGIYTGF----FTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI
        S+K +L+ +    T F    +   W +  PKK CKF IW ++H  +NT ++LQ+R P +  +PNWC +C +SQE ++HLFI
Subjt:  SMKFNLAVSQGIYTGF----FTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein6.82e-1340.74Show/hide
Query:  SMKFNLAVSQGIYTGF----FTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI
        S+K +L+ +    T F    +   W +  PKK CKF IW ++H  +NT ++LQ+R P +  +PNWC +C +SQE ++HLFI
Subjt:  SMKFNLAVSQGIYTGF----FTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein3.57e-1340.74Show/hide
Query:  SVKSMKFNLAVSQG-IYTGFFTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI
        SVK +     VS    +   +   W +  PKK CKF IW ++H  +NT ++LQ+R P +  +PNWC +C +SQE ++HLFI
Subjt:  SVKSMKFNLAVSQG-IYTGFFTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI

A0A5D3CI43 LINE-1 retrotransposable element ORF2 protein2.91e-1347.46Show/hide
Query:  NFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYPFLC-NPNWCVLCQRSQESLDHLFI
        + W   +P+K CKF IW ++H+ LNT + +Q+R P +C NPNWC+ C+ S E ++HLFI
Subjt:  NFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYPFLC-NPNWCVLCQRSQESLDHLFI

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein3.54e-1340.74Show/hide
Query:  SVKSMKFNLAVSQG-IYTGFFTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI
        SVK +     VS    +   +   W +  PKK CKF IW ++H  +NT ++LQ+R P +  +PNWC +C +SQE ++HLFI
Subjt:  SVKSMKFNLAVSQG-IYTGFFTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYP-FLCNPNWCVLCQRSQESLDHLFI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTGTCAAGTCTATGAAATTCAACCTTGCTGTCTCTCAAGGCATATATACAGGTTTCTTCACCAATTTTTGGGACTTGCTTCTGCCCAAAAAAAAATGTAAATTCCTCAT
ATGGTGCATTCTCCACCGAGGGCTCAATACACAAGAAAAGCTTCAACAAAGGTATCCTTTTCTTTGTAATCCAAATTGGTGTGTATTATGTCAGCGCTCTCAGGAATCTT
TGGACCATCTTTTCATT
mRNA sequenceShow/hide mRNA sequence
TCTGTCAAGTCTATGAAATTCAACCTTGCTGTCTCTCAAGGCATATATACAGGTTTCTTCACCAATTTTTGGGACTTGCTTCTGCCCAAAAAAAAATGTAAATTCCTCAT
ATGGTGCATTCTCCACCGAGGGCTCAATACACAAGAAAAGCTTCAACAAAGGTATCCTTTTCTTTGTAATCCAAATTGGTGTGTATTATGTCAGCGCTCTCAGGAATCTT
TGGACCATCTTTTCATT
Protein sequenceShow/hide protein sequence
SVKSMKFNLAVSQGIYTGFFTNFWDLLLPKKKCKFLIWCILHRGLNTQEKLQQRYPFLCNPNWCVLCQRSQESLDHLFI