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MC00g_new0423 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC00g_new0423
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionHistone H3
Genome locationscaffold7:41670..44387
RNA-Seq ExpressionMC00g_new0423
SyntenyMC00g_new0423
Gene Ontology termsGO:0009567 - double fertilization forming a zygote and endosperm (biological process)
GO:0010597 - green leaf volatile biosynthetic process (biological process)
GO:0034508 - centromere complex assembly (biological process)
GO:0051301 - cell division (biological process)
GO:0051307 - meiotic chromosome separation (biological process)
GO:0000775 - chromosome, centromeric region (cellular component)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000164 - Histone H3/CENP-A
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
NP_001289496.1 histone H3-like centromeric protein HTR12 [Nicotiana sylvestris]3.97e-2776.06Show/hide
Query:  PARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL
        P RT  KK R+RPGTVALREIR+FQKTWNLLIPA+ FIR VKE+SY  APE+TRWQAEALIALQE    FL
Subjt:  PARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL

XP_011659153.1 histone H3-like centromeric protein HTR12 isoform X2 [Cucumis sativus]4.17e-2677.14Show/hide
Query:  ARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL
        +RT  KK+RFRPGTVAL+EIR  QK+WNLLIPAS FIRAVKEVS QLAP+ITRWQAEAL+ALQE    FL
Subjt:  ARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL

XP_022156549.1 histone H3-like centromeric protein HTR12 [Momordica charantia]1.05e-3694.44Show/hide
Query:  PPARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL
        PPARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQE    FL
Subjt:  PPARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL

XP_022959605.1 histone H3-like centromeric protein HTR12 [Cucurbita moschata]1.06e-3183.33Show/hide
Query:  PPARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL
        P +RT+GKKRRFRPGTVALREIRQ QK+WNLLIPAS+FIRAVKEVSYQLAP++TRWQAEALIALQE    FL
Subjt:  PPARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL

XP_038896752.1 histone H3-like centromeric protein HTR12 [Benincasa hispida]3.96e-2980.28Show/hide
Query:  PARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL
        P RT+ KK+RFRPGTVALREIR  QK+WNLLIPAS FIRAVKEVSYQLAP+ITRWQAEAL+ALQE    FL
Subjt:  PARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL

TrEMBL top hitse value%identityAlignment
A0A6J1DTT5 Histone H3.25.11e-3794.44Show/hide
Query:  PPARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL
        PPARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQE    FL
Subjt:  PPARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL

A0A6J1H6R9 Histone H3.25.13e-3283.33Show/hide
Query:  PPARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL
        P +RT+GKKRRFRPGTVALREIRQ QK+WNLLIPAS+FIRAVKEVSYQLAP++TRWQAEALIALQE    FL
Subjt:  PPARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL

A0A6J1KTZ4 Histone H3.25.13e-3283.33Show/hide
Query:  PPARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL
        P +RT+GKKRRFRPGTVALREIRQ QK+WNLLIPAS+FIRAVKEVSYQLAP++TRWQAEALIALQE    FL
Subjt:  PPARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL

B7X8C9 Centromere specific histone H3 variant1.92e-2776.06Show/hide
Query:  PARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL
        P RT  KK R+RPGTVALREIR+FQKTWNLLIPA+ FIR VKE+SY  APE+TRWQAEALIALQE    FL
Subjt:  PARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL

B7XEI8 Centromere specific histone H3 variant1.92e-2776.06Show/hide
Query:  PARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL
        P RT  KK R+RPGTVALREIR+FQKTWNLLIPA+ FIR VKE+SY  APE+TRWQAEALIALQE    FL
Subjt:  PARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL

SwissProt top hitse value%identityAlignment
P41353 Histone H3.31.3e-0847.69Show/hide
Query:  KKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL
        K  +FRPGTVALREIR++QKT +LLI    F R V++++ ++  +I R+Q++A++ALQE   ++L
Subjt:  KKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL

Q59LN9 Histone H3-like centromeric protein CSE44.3e-0953.03Show/hide
Query:  KRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQ-LAPEI-TRWQAEALIALQEVIASFL
        K+R+RPGT ALREIRQ+QK+ +LLI    F R V+E+S   + P    RWQ+ A++ALQE   SFL
Subjt:  KRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQ-LAPEI-TRWQAEALIALQEVIASFL

Q7RXR3 Histone H3-like centromeric protein hH3v7.1e-1251.47Show/hide
Query:  GKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAP--EITRWQAEALIALQEVIASFL
        GKKRR+RPGT+AL+EIR +Q+T +LL+    F R V+E++ Q  P  E  RWQ++A++ALQE   +FL
Subjt:  GKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAP--EITRWQAEALIALQEVIASFL

Q803H4 Histone H3-like centromeric protein A2.5e-0945.21Show/hide
Query:  GPPARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL
        GP   +  KK +FRPGT AL EIR++QK+  LL+  + F R V+EV    + E   WQ  AL+ALQE   +F+
Subjt:  GPPARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL

Q8RVQ9 Histone H3-like centromeric protein HTR125.3e-1558.33Show/hide
Query:  PARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLA-PEITRWQAEALIALQEVIASFL
        P  +  K  R+RPGTVAL+EIR FQK  NLLIPA+SFIR V+ +++ LA P+I RW AEAL+ALQE    +L
Subjt:  PARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLA-PEITRWQAEALIALQEVIASFL

Arabidopsis top hitse value%identityAlignment
AT1G01370.1 Histone superfamily protein3.7e-1658.33Show/hide
Query:  PARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLA-PEITRWQAEALIALQEVIASFL
        P  +  K  R+RPGTVAL+EIR FQK  NLLIPA+SFIR V+ +++ LA P+I RW AEAL+ALQE    +L
Subjt:  PARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLA-PEITRWQAEALIALQEVIASFL

AT1G01370.2 Histone superfamily protein3.7e-1658.33Show/hide
Query:  PARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLA-PEITRWQAEALIALQEVIASFL
        P  +  K  R+RPGTVAL+EIR FQK  NLLIPA+SFIR V+ +++ LA P+I RW AEAL+ALQE    +L
Subjt:  PARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLA-PEITRWQAEALIALQEVIASFL

AT1G09200.1 Histone superfamily protein1.7e-0847.69Show/hide
Query:  KKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL
        K  RFRPGTVALREIR++QK+  LLI    F R V+E++     ++ R+Q+ A+ ALQE   ++L
Subjt:  KKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL

AT1G19890.1 male-gamete-specific histone H31.7e-0846.15Show/hide
Query:  KKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL
        +  RFRPGTVALREIR++QK+ +LLI    F R V+E++     ++ R+Q+ A++ALQE   ++L
Subjt:  KKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL

AT3G27360.1 Histone superfamily protein1.7e-0847.69Show/hide
Query:  KKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL
        K  RFRPGTVALREIR++QK+  LLI    F R V+E++     ++ R+Q+ A+ ALQE   ++L
Subjt:  KKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRWQAEALIALQEVIASFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTTTCTTTGGTTATGTATGATGGAAAAGGAGTTAGTGAGATTTCAGGTCATGGATTGAGGATTGGCTTTCAGAAGTCCTACAAGGCTGGTGGCTCCCTAAAGAG
GCTAAAGTTGTGTGGAACTGTGCCTCAAGAGCTCTCCTATGACATCTATGGTCCACCAGCAAGGACATCTGGGAAGAAAAGACGGTTCAGGCCAGGGACAGTTGCATTGA
GGGAAATTCGGCAATTCCAAAAGACATGGAATCTGCTAATTCCAGCTAGCAGTTTCATCCGAGCAGTAAAAGAAGTAAGCTACCAGTTAGCTCCAGAGATTACGCGGTGG
CAAGCTGAAGCTTTAATAGCTCTTCAGGAAGTAATTGCTTCTTTTCTATGGCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTTTCTTTGGTTATGTATGATGGAAAAGGAGTTAGTGAGATTTCAGGTCATGGATTGAGGATTGGCTTTCAGAAGTCCTACAAGGCTGGTGGCTCCCTAAAGAG
GCTAAAGTTGTGTGGAACTGTGCCTCAAGAGCTCTCCTATGACATCTATGGTCCACCAGCAAGGACATCTGGGAAGAAAAGACGGTTCAGGCCAGGGACAGTTGCATTGA
GGGAAATTCGGCAATTCCAAAAGACATGGAATCTGCTAATTCCAGCTAGCAGTTTCATCCGAGCAGTAAAAGAAGTAAGCTACCAGTTAGCTCCAGAGATTACGCGGTGG
CAAGCTGAAGCTTTAATAGCTCTTCAGGAAGTAATTGCTTCTTTTCTATGGCTTTAG
Protein sequenceShow/hide protein sequence
MSLSLVMYDGKGVSEISGHGLRIGFQKSYKAGGSLKRLKLCGTVPQELSYDIYGPPARTSGKKRRFRPGTVALREIRQFQKTWNLLIPASSFIRAVKEVSYQLAPEITRW
QAEALIALQEVIASFLWL