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MC01g0101 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC01g0101
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionprotein ROOT PRIMORDIUM DEFECTIVE 1
Genome locationMC01:5798173..5798580
RNA-Seq ExpressionMC01g0101
SyntenyMC01g0101
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR021099 - Plant organelle RNA recognition domain
IPR045040 - PORR family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156041.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Momordica charantia]2.89e-8192.65Show/hide
Query:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ
        V LKWVKNRSLDHIIDMETDLKAASL KDA+K SST FITVK IADWQKLLGLTIP+LRFIRRYPTLFH FPHSRYANLPCFRLTETAMFLDHQESSIHQ
Subjt:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ

Query:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
        VHESD VERLCRMLMMMKTRALPL SLRPLEWDLGL
Subjt:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL

XP_022967804.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita maxima]8.94e-7584.56Show/hide
Query:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ
        V LKWVKNRSLDHIID ETDLKAASL KDA+K SST F+TVK IADWQKLLGLTIPVLRFIRRYPTLFH FPHSRYANLPCFRLT+TA+ LD QE+S+HQ
Subjt:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ

Query:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
        +HESD VERLCR+LMMMK RA+PL SLRPLEWDLGL
Subjt:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL

XP_023522997.1 protein WHAT'S THIS FACTOR 1-like, partial [Cucurbita pepo subsp. pepo]2.37e-7786.03Show/hide
Query:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ
        V LKWVKNRSLDHIID ETDLKAASL KDA+  SST FIT K IADW KLLGLTIPVLRFIRRYPTLFH FPHSRYANLPCFRLT+TA+ LD QESSIHQ
Subjt:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ

Query:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
        +HESD VERLCR+LMMMKTRA+PLQSLRPLEWDLGL
Subjt:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL

XP_023543562.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo]6.32e-7586.03Show/hide
Query:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ
        V LKWVKNRSLDHIID ETDLKAASL KDA+  SST FIT K IADW KLLGLTIPVLRFIRRYPTLFH FPHSRYANLPCFRLT+TA+ LD QESSIHQ
Subjt:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ

Query:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
        +HESD VERLCR+LMMMKTRA+PLQSLRPLEWDLGL
Subjt:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL

XP_023543563.1 protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo]6.32e-7586.03Show/hide
Query:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ
        V LKWVKNRSLDHIID ETDLKAASL KDA+  SST FIT K IADW KLLGLTIPVLRFIRRYPTLFH FPHSRYANLPCFRLT+TA+ LD QESSIHQ
Subjt:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ

Query:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
        +HESD VERLCR+LMMMKTRA+PLQSLRPLEWDLGL
Subjt:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL

TrEMBL top hitse value%identityAlignment
A0A1S3C3X3 protein ROOT PRIMORDIUM DEFECTIVE 12.15e-7283.09Show/hide
Query:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ
        V LKWVKNRSLDHIID ETDLKAA L K+A+K SST FIT K IA+WQKLLGLTIPV+RFIRRYPTLFH FPHSRY NLPCFRLT+TA+ LD +ESSIHQ
Subjt:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ

Query:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
         HESD VERLCR+LMMMKTR LPLQSLRPLEWDLGL
Subjt:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL

A0A5D3DR92 Protein ROOT PRIMORDIUM DEFECTIVE 12.15e-7283.09Show/hide
Query:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ
        V LKWVKNRSLDHIID ETDLKAA L K+A+K SST FIT K IA+WQKLLGLTIPV+RFIRRYPTLFH FPHSRY NLPCFRLT+TA+ LD +ESSIHQ
Subjt:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ

Query:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
         HESD VERLCR+LMMMKTR LPLQSLRPLEWDLGL
Subjt:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL

A0A6J1DTM9 protein ROOT PRIMORDIUM DEFECTIVE 11.40e-8192.65Show/hide
Query:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ
        V LKWVKNRSLDHIIDMETDLKAASL KDA+K SST FITVK IADWQKLLGLTIP+LRFIRRYPTLFH FPHSRYANLPCFRLTETAMFLDHQESSIHQ
Subjt:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ

Query:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
        VHESD VERLCRMLMMMKTRALPL SLRPLEWDLGL
Subjt:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL

A0A6J1HVG3 protein WHAT'S THIS FACTOR 1 homolog6.12e-7583.82Show/hide
Query:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ
        V LKWVKNRSLDHIID ETDLKAASL KDA+K SST F+T+K IADWQKLLGLTIPVLRFIRRYPTLFH FPHSRYANLPCFRLT+TA+ LD QE+S+HQ
Subjt:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ

Query:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
        +HESD VERLCR+LMMMK RA+PL SLRPLEWDLGL
Subjt:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL

A0A6J1HXS6 protein WHAT'S THIS FACTOR 1 homolog4.33e-7584.56Show/hide
Query:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ
        V LKWVKNRSLDHIID ETDLKAASL KDA+K SST F+TVK IADWQKLLGLTIPVLRFIRRYPTLFH FPHSRYANLPCFRLT+TA+ LD QE+S+HQ
Subjt:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ

Query:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
        +HESD VERLCR+LMMMK RA+PL SLRPLEWDLGL
Subjt:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL

SwissProt top hitse value%identityAlignment
Q9ZUZ6 Protein WHAT'S THIS FACTOR 9, mitochondrial2.6e-1230.43Show/hide
Query:  VPLKWVKNRSLDHI--IDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSI
        V +KW ++   D+I  I   + LK+    K+ +       I +  I+   +   ++  +  F+R++P++F  F    Y NLP FRLT  A  LD QE  +
Subjt:  VPLKWVKNRSLDHI--IDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSI

Query:  HQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
        +Q    D+ +RL ++++M K   LPL  ++ ++W LGL
Subjt:  HQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL

Arabidopsis top hitse value%identityAlignment
AT1G71850.1 Ubiquitin carboxyl-terminal hydrolase family protein1.7e-1126.67Show/hide
Query:  KWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIH--QV
        K+V++R LDH ++ E +L+     KD ++      + +  I   +  L + +  + FIR +P++F  F        P   LT   +  D  E  ++  + 
Subjt:  KWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIH--QV

Query:  HESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
        ++  + +RL ++LM+ +   +PL+ L  L+WDLGL
Subjt:  HESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL

AT2G39120.1 Ubiquitin carboxyl-terminal hydrolase family protein1.8e-1330.43Show/hide
Query:  VPLKWVKNRSLDHI--IDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSI
        V +KW ++   D+I  I   + LK+    K+ +       I +  I+   +   ++  +  F+R++P++F  F    Y NLP FRLT  A  LD QE  +
Subjt:  VPLKWVKNRSLDHI--IDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSI

Query:  HQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
        +Q    D+ +RL ++++M K   LPL  ++ ++W LGL
Subjt:  HQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL

AT3G58520.1 Ubiquitin carboxyl-terminal hydrolase family protein9.1e-5368.38Show/hide
Query:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ
        V LKWVKN++LDH+ID ETDLKAA + KDA+K S T F+T K +ADWQKLLGLT+PVLRF+RRYPTLFH FPH+RYA+LPCF+LT+TA+ LD QE  IHQ
Subjt:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIHQ

Query:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
         HE+D VERLCR+LMMM+++ + L+SL  L++DLGL
Subjt:  VHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL

AT3G58520.2 Ubiquitin carboxyl-terminal hydrolase family protein4.8e-3856.93Show/hide
Query:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSF-ITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIH
        V LKWVKN++LDH+ID ETDLKAA + KDA+K S T   I   F   W K             RYPTLFH FPH+RYA+LPCF+LT+TA+ LD QE  IH
Subjt:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSF-ITVKFIADWQKLLGLTIPVLRFIRRYPTLFHXFPHSRYANLPCFRLTETAMFLDHQESSIH

Query:  QVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
        Q HE+D VERLCR+LMMM+++ + L+SL  L++DLGL
Subjt:  QVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL

AT5G48040.1 Ubiquitin carboxyl-terminal hydrolase family protein4.7e-1735.71Show/hide
Query:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGL--TIPVLRFIRRYPTLF--HXFPHSRYANLPCFRLTETAMFLDHQES
        V LKWVK+R LD ++  E  L+A       +  S    + +  +   +  LGL   + +  FIRRYP +F  H +  S   ++PCF LT   + L ++E 
Subjt:  VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGL--TIPVLRFIRRYPTLF--HXFPHSRYANLPCFRLTETAMFLDHQES

Query:  SIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL
         + +V+E D++ RLC++LM+   R L L S+  L WDLGL
Subjt:  SIHQVHESDIVERLCRMLMMMKTRALPLQSLRPLEWDLGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTCCACTAAAATGGGTCAAGAATCGAAGCCTCGATCACATCATCGACATGGAGACTGATTTGAAGGCTGCTTCCCTCTTCAAGGATGCCGTTAAACACTCCTCCACTAG
CTTCATCACAGTCAAATTCATCGCGGATTGGCAAAAGCTACTCGGCCTCACCATCCCCGTTCTTCGATTCATCCGGAGGTACCCAACTCTCTTTCACTAATTTCCTCATT
CTCGTTACGCTAATTTGCCTTGCTTTCGTTTGACGGAAACCGCAATGTTCCTAGATCACCAAGAGAGTAGTATACACCAAGTTCACGAGAGCGATATTGTCGAAAGGCTC
TGTAGAATGCTTATGATGATGAAAACTAGGGCTCTTCCACTTCAGTCGTTGCGTCCTTTGGAGTGGGATCTAGGTTTG
mRNA sequenceShow/hide mRNA sequence
GTTCCACTAAAATGGGTCAAGAATCGAAGCCTCGATCACATCATCGACATGGAGACTGATTTGAAGGCTGCTTCCCTCTTCAAGGATGCCGTTAAACACTCCTCCACTAG
CTTCATCACAGTCAAATTCATCGCGGATTGGCAAAAGCTACTCGGCCTCACCATCCCCGTTCTTCGATTCATCCGGAGGTACCCAACTCTCTTTCACTAATTTCCTCATT
CTCGTTACGCTAATTTGCCTTGCTTTCGTTTGACGGAAACCGCAATGTTCCTAGATCACCAAGAGAGTAGTATACACCAAGTTCACGAGAGCGATATTGTCGAAAGGCTC
TGTAGAATGCTTATGATGATGAAAACTAGGGCTCTTCCACTTCAGTCGTTGCGTCCTTTGGAGTGGGATCTAGGTTTG
Protein sequenceShow/hide protein sequence
VPLKWVKNRSLDHIIDMETDLKAASLFKDAVKHSSTSFITVKFIADWQKLLGLTIPVLRFIRRYPTLFHUFPHSRYANLPCFRLTETAMFLDHQESSIHQVHESDIVERL
CRMLMMMKTRALPLQSLRPLEWDLGL