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MC01g0118 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC01g0118
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description50S ribosomal protein L12
Genome locationMC01:6207605..6207754
RNA-Seq ExpressionMC01g0118
SyntenyMC01g0118
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0000311 - plastid large ribosomal subunit (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000206 - Ribosomal protein L7/L12
IPR013823 - Ribosomal protein L7/L12, C-terminal
IPR014719 - Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7632826.1 Ribosomal protein L7/L12 C-terminal/adaptor protein ClpS-like, partial [Arabidopsis suecica]1.09e-1075.61Show/hide
Query:  SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEA
        S R+AVIK V ALTSLALKEAKELIE LPKK++EG++K+EA
Subjt:  SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEA

RXH89406.1 hypothetical protein DVH24_031763 [Malus domestica]1.89e-1082.93Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

TKY67758.1 50S ribosomal protein L12-1 [Spatholobus suberectus]1.28e-1080.49Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        R+AVIKTV ALTSLALKEAKELIE LPKK++EG+SKEEA++
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

TQD98087.1 hypothetical protein C1H46_016352 [Malus baccata]1.89e-1082.93Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

XP_008341453.2 50S ribosomal protein L12-1, chloroplastic [Malus domestica]1.89e-1082.93Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

TrEMBL top hitse value%identityAlignment
A0A498HKH5 Uncharacterized protein9.15e-1182.93Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

A0A498J2K9 Uncharacterized protein9.15e-1182.93Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

A0A540MH53 Uncharacterized protein9.15e-1182.93Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

A0A540MW00 Uncharacterized protein9.15e-1182.93Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

A0A5N5G8Z0 50S ribosomal protein L12-19.15e-1182.93Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        R+AVIK V ALTSLALKEAKELIE LPKK+REGISK+EA+E
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

SwissProt top hitse value%identityAlignment
O22386 50S ribosomal protein L12, chloroplastic2.7e-0762.5Show/hide
Query:  SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        S R+A IK V ALT+LALKEAK+LIE LPKK +EG+SK+EA++  ++L
Subjt:  SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

P24929 50S ribosomal protein L12, chloroplastic2.4e-0867.39Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        R+A IK V ALTSLALKEAKELIE LPKK++EG+SK+EA++  ++L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

P36210 50S ribosomal protein L12-1, chloroplastic2.9e-0976.74Show/hide
Query:  SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        S R+AVIK V ALTSLALKEAKELIE LPKK++EGI+K+EA+E
Subjt:  SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

P36212 50S ribosomal protein L12-3, chloroplastic2.9e-0976.74Show/hide
Query:  SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        S R+AVIK V ALTSLALKEAKELIE LPKK++EGI+K+EA+E
Subjt:  SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

P36688 50S ribosomal protein L12, chloroplastic2.4e-0867.39Show/hide
Query:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        R+A IK V ALTSLALKEAKELIE LPKK++EG+SK+EA++  ++L
Subjt:  RLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

Arabidopsis top hitse value%identityAlignment
AT3G06040.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein1.1e-0650Show/hide
Query:  NLSHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        N S ++ VIK V   TSL LKEAKEL+E +P   ++G++KEEA E+I ++
Subjt:  NLSHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

AT3G06040.2 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein1.1e-0650Show/hide
Query:  NLSHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL
        N S ++ VIK V   TSL LKEAKEL+E +P   ++G++KEEA E+I ++
Subjt:  NLSHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL

AT3G27830.1 ribosomal protein L12-A2.0e-1076.74Show/hide
Query:  SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        S R+AVIK V ALTSLALKEAKELIE LPKK++EGI+K+EA+E
Subjt:  SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

AT3G27840.1 ribosomal protein L12-B2.8e-0757.14Show/hide
Query:  HRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        +R+AVI  + A+TSL+L E+KELIE  PKK++EG++K+EA+E
Subjt:  HRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE

AT3G27850.1 ribosomal protein L12-C2.0e-1076.74Show/hide
Query:  SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE
        S R+AVIK V ALTSLALKEAKELIE LPKK++EGI+K+EA+E
Subjt:  SHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATCTCTCTCATCGCCTTGCTGTTATTAAGACTGTTGGGGCTTTGACGAGCTTGGCATTGAAGGAGGCAAAAGAGCTCATTGAAGATTTGCCAAAGAAGTATAGAGAAGG
GATTTCGAAGGAAGAGGCGAAGGAGCTCATTGAAAGGTTA
mRNA sequenceShow/hide mRNA sequence
AATCTCTCTCATCGCCTTGCTGTTATTAAGACTGTTGGGGCTTTGACGAGCTTGGCATTGAAGGAGGCAAAAGAGCTCATTGAAGATTTGCCAAAGAAGTATAGAGAAGG
GATTTCGAAGGAAGAGGCGAAGGAGCTCATTGAAAGGTTA
Protein sequenceShow/hide protein sequence
NLSHRLAVIKTVGALTSLALKEAKELIEDLPKKYREGISKEEAKELIERL