| GenBank top hits | e value | %identity | Alignment |
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| KAA0063818.1 RNA polymerase sigma factor sigF [Cucumis melo var. makuwa] | 0.0 | 87.14 | Show/hide |
Query: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
VYM +QA+PARYFSTSF+ QEQHHECRPQSQILKDD+TSQMTLDRRLIERSV IDEGSR HDHL+WELKHQA EWP LLSSWPSLQM EYKISS EK+
Subjt: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
Query: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTN
N E+LV+DEPE+VIALAKKALSASKQAA LV+ESELVGT++D SS S KEG V+STRLQ+RRSK+R+VPKHVTTIHET N RGKD+RRKT+
Subjt: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTN
Query: ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKY
E FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEA+GITCQ LQSQLH FR SREKLINANLRMVVHIAK+Y
Subjt: ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKY
Query: QGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERL
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKN+ VR GNYKPSKEELAAHVGITVERL
Subjt: QGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERL
Query: DKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRA
DKL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLR+GIEDGKEKTLLEIGNMFGLSKERVRQLENRA
Subjt: DKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRA
Query: LYKLKRCCNSQGLGAYADLLT
LYKLKRCCNSQGLGAYADLLT
Subjt: LYKLKRCCNSQGLGAYADLLT
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| XP_016902883.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo] | 0.0 | 87.33 | Show/hide |
Query: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
VYM +QA+PARYFSTSF+ QEQHHECRPQSQILKDD+TSQMTLDRRLIERSV IDEGSR HDHL+WELKHQA EWP LLSSWPSLQM EYKISS EK+
Subjt: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
Query: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTN
N E+LV+DEPE+VIALAKKALSASKQAA LV+ESELVGT++D SS S KEG V+STRLQDRRSK+R+VPKHVTTIHET N RGKD+RRKT+
Subjt: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTN
Query: ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKY
E FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEA+GITCQ LQSQLH FR SREKLINANLRMVVHIAK+Y
Subjt: ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKY
Query: QGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERL
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKN+ VR GNYKPSKEELAAHVGITVERL
Subjt: QGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERL
Query: DKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRA
DKL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLR+GIEDGKEKTLLEIGNMFGLSKERVRQLENRA
Subjt: DKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRA
Query: LYKLKRCCNSQGLGAYADLLT
LYKLKRCCNSQGLGAYADLLT
Subjt: LYKLKRCCNSQGLGAYADLLT
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| XP_016902885.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis melo] | 0.0 | 87.33 | Show/hide |
Query: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
VYM +QA+PARYFSTSF+ QEQHHECRPQSQILKDD+TSQMTLDRRLIERSV IDEGSR HDHL+WELKHQA EWP LLSSWPSLQM EYKISS EK+
Subjt: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
Query: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTN
N E+LV+DEPE+VIALAKKALSASKQAA LV+ESELVGT++D SS S KEG V+STRLQDRRSK+R+VPKHVTTIHET N RGKD+RRKT+
Subjt: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTN
Query: ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKY
E FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEA+GITCQ LQSQLH FR SREKLINANLRMVVHIAK+Y
Subjt: ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKY
Query: QGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERL
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKN+ VR GNYKPSKEELAAHVGITVERL
Subjt: QGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERL
Query: DKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRA
DKL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLR+GIEDGKEKTLLEIGNMFGLSKERVRQLENRA
Subjt: DKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRA
Query: LYKLKRCCNSQGLGAYADLLT
LYKLKRCCNSQGLGAYADLLT
Subjt: LYKLKRCCNSQGLGAYADLLT
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| XP_022143971.1 RNA polymerase sigma factor sigF, chloroplastic [Momordica charantia] | 0.0 | 99.24 | Show/hide |
Query: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
Subjt: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
Query: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEE---KEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRR
PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSE+ KEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRR
Subjt: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEE---KEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRR
Query: KTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIA
KTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIA
Subjt: KTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIA
Query: KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITV
KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITV
Subjt: KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITV
Query: ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLE
ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLE
Subjt: ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLE
Query: NRALYKLKRCCNSQGLGAYADLLT
NRALYKLKRCCNSQGLGAYADLLT
Subjt: NRALYKLKRCCNSQGLGAYADLLT
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| XP_038882876.1 RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida] | 0.0 | 88.31 | Show/hide |
Query: AVYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEK
+V M H+QA PARYFSTSF+ QEQHHECRPQSQILKDD+TSQ TLDRRLIERSVSIDEG+R HDHL+WE KHQA EWPGLLSSWPSLQM EYKISSVEK
Subjt: AVYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEK
Query: QPNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKT
Q N E+LV+DEPE+VIALAKKALSASKQAASLV+ESELVGTN+D +S S KEG V+STRLQDRRSK+R+VPKHVTTIHET N +GKD+RRKT
Subjt: QPNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKT
Query: NENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKK
ENFDPNDPLRLFLWGPETKKLLTV+EESELIVQIQDLMIL+NVKARLQSQFGREPTLVEWAEA+G+TCQ LQSQL FR+SREKLINANLRMVVHIAK+
Subjt: NENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKK
Query: YQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVER
YQGRGLSL DLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKN+FVR GNYKPSKEELAA VGITVER
Subjt: YQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVER
Query: LDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENR
LDKLLFMSRIPRSLQQPVW DQDTTFQEITADSE+DTPDVSVERELMRRHIRNLLSILSPKERRIIRLR+GIEDGKEKTLLEIGNMFGLSKERVRQLENR
Subjt: LDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENR
Query: ALYKLKRCCNSQGLGAYADLLT
ALYKLKRC NSQGLGAYADLLT
Subjt: ALYKLKRCCNSQGLGAYADLLT
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1S4E3S8 RNA polymerase sigma factor sigF, chloroplastic isoform X1 | 0.0 | 87.33 | Show/hide |
Query: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
VYM +QA+PARYFSTSF+ QEQHHECRPQSQILKDD+TSQMTLDRRLIERSV IDEGSR HDHL+WELKHQA EWP LLSSWPSLQM EYKISS EK+
Subjt: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
Query: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTN
N E+LV+DEPE+VIALAKKALSASKQAA LV+ESELVGT++D SS S KEG V+STRLQDRRSK+R+VPKHVTTIHET N RGKD+RRKT+
Subjt: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTN
Query: ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKY
E FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEA+GITCQ LQSQLH FR SREKLINANLRMVVHIAK+Y
Subjt: ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKY
Query: QGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERL
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKN+ VR GNYKPSKEELAAHVGITVERL
Subjt: QGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERL
Query: DKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRA
DKL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLR+GIEDGKEKTLLEIGNMFGLSKERVRQLENRA
Subjt: DKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRA
Query: LYKLKRCCNSQGLGAYADLLT
LYKLKRCCNSQGLGAYADLLT
Subjt: LYKLKRCCNSQGLGAYADLLT
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| A0A1S4E4I4 RNA polymerase sigma factor sigF, chloroplastic isoform X2 | 0.0 | 87.33 | Show/hide |
Query: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
VYM +QA+PARYFSTSF+ QEQHHECRPQSQILKDD+TSQMTLDRRLIERSV IDEGSR HDHL+WELKHQA EWP LLSSWPSLQM EYKISS EK+
Subjt: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
Query: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTN
N E+LV+DEPE+VIALAKKALSASKQAA LV+ESELVGT++D SS S KEG V+STRLQDRRSK+R+VPKHVTTIHET N RGKD+RRKT+
Subjt: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTN
Query: ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKY
E FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEA+GITCQ LQSQLH FR SREKLINANLRMVVHIAK+Y
Subjt: ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKY
Query: QGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERL
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKN+ VR GNYKPSKEELAAHVGITVERL
Subjt: QGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERL
Query: DKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRA
DKL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLR+GIEDGKEKTLLEIGNMFGLSKERVRQLENRA
Subjt: DKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRA
Query: LYKLKRCCNSQGLGAYADLLT
LYKLKRCCNSQGLGAYADLLT
Subjt: LYKLKRCCNSQGLGAYADLLT
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| A0A5A7V893 RNA polymerase sigma factor sigF | 0.0 | 87.14 | Show/hide |
Query: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
VYM +QA+PARYFSTSF+ QEQHHECRPQSQILKDD+TSQMTLDRRLIERSV IDEGSR HDHL+WELKHQA EWP LLSSWPSLQM EYKISS EK+
Subjt: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
Query: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTN
N E+LV+DEPE+VIALAKKALSASKQAA LV+ESELVGT++D SS S KEG V+STRLQ+RRSK+R+VPKHVTTIHET N RGKD+RRKT+
Subjt: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTN
Query: ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKY
E FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEA+GITCQ LQSQLH FR SREKLINANLRMVVHIAK+Y
Subjt: ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKY
Query: QGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERL
GRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKN+ VR GNYKPSKEELAAHVGITVERL
Subjt: QGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERL
Query: DKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRA
DKL+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLR+GIEDGKEKTLLEIGNMFGLSKERVRQLENRA
Subjt: DKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRA
Query: LYKLKRCCNSQGLGAYADLLT
LYKLKRCCNSQGLGAYADLLT
Subjt: LYKLKRCCNSQGLGAYADLLT
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| A0A5D3CAF4 RNA polymerase sigma factor | 0.0 | 87.09 | Show/hide |
Query: MLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQPN
M +QA+PARYFSTSF+ QEQHHECRPQSQILKDD+TSQMTLDRRLIERSV IDEGSR HDHL+WELKHQA EWP LLSSWPSLQM EYKISS EK+
Subjt: MLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQPN
Query: NTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTNEN
N E+LV+DEPE+VIALAKKALSASKQAA LV+ESELVGT++D SS S KEG V+STRLQ+RRSK+R+VPKHVTTIHET N RGKD+RRKT+E
Subjt: NTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTNEN
Query: FDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKYQG
FDPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMIL+NVKA+LQSQFGREPTLVEWAEA+GITCQ LQSQLH FR SREKLINANLRMVVHIAK+Y G
Subjt: FDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKYQG
Query: RGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDK
RGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKN+ VR GNYKPSKEELAAHVGITVERLDK
Subjt: RGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDK
Query: LLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRALY
L+FMSRIPRSLQQPVWADQDTT+QEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLR+GIEDGKEKTLLEIGNMFGLSKERVRQLENRALY
Subjt: LLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRALY
Query: KLKRCCNSQGLGAYADLLT
KLKRCCNSQGLGAYADLLT
Subjt: KLKRCCNSQGLGAYADLLT
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| A0A6J1CRW8 RNA polymerase sigma factor sigF, chloroplastic | 0.0 | 99.24 | Show/hide |
Query: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
Subjt: VYMLHDQATPARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQMGEYKISSVEKQ
Query: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEE---KEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRR
PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSE+ KEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRR
Subjt: PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEE---KEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRR
Query: KTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIA
KTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIA
Subjt: KTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIA
Query: KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITV
KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITV
Subjt: KKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITV
Query: ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLE
ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLE
Subjt: ERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLE
Query: NRALYKLKRCCNSQGLGAYADLLT
NRALYKLKRCCNSQGLGAYADLLT
Subjt: NRALYKLKRCCNSQGLGAYADLLT
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 1.2e-65 | 36.63 | Show/hide |
Query: IALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKE-----GIAVKSTRLQDRRSKRRR-VPKHVTTIHETYNLRGKDTRRKTNENFDPNDPLRLF
+A++ + + K AS E +G +++S E E +AV+STR +R+++R + + K + I +R + D NDPLR
Subjt: IALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKE-----GIAVKSTRLQDRRSKRRR-VPKHVTTIHETYNLRGKDTRRKTNENFDPNDPLRLF
Query: LWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQ
+ KLLTV+EE EL IQDL+ LE ++ L + GR+PT +WA A G+ + L+ ++H + ++K+I +N+R+V+ IAK YQG G++L DL+Q
Subjt: LWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQ
Query: EGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRS
EG GL++ EKF G +F+TYA+WWI+Q++RK++ + SR IRLP ++ +V EA+ E P EE+A G++++RL +L + PRS
Subjt: EGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRS
Query: LQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQG
L Q + +Q+ E+ AD E T + + +E MR+ + +L L +E+++IR R+G+EDG+ KTL EIG M G+S+ERVRQ+E+ A KLK +
Subjt: LQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQG
Query: LGAY
L Y
Subjt: LGAY
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| P26683 RNA polymerase sigma factor SigA | 4.6e-65 | 40.65 | Show/hide |
Query: RRKTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVH
R ++ + D +RL+L +LL EE EL +I DL+ LE V+ RL + R+P EWAEA+ + + +LH R +++K++ +NLR+VV
Subjt: RRKTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVH
Query: IAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGI
IAKKY RGLS DL+QEGSLGL+++ EKF + G +F+TYA WWIRQ+I +AI + SRTIRLP ++Y + ++ + +E KP++EE+A + +
Subjt: IAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGI
Query: TVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQ
T+E+L + +++P SL+ P+ ++D+ + +S+ +TP+ V + L+R + +L LSP+ER ++RLRYG++DG+ KTL EIG +F +++ER+RQ
Subjt: TVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQ
Query: LENRALYKLK
+E +AL KL+
Subjt: LENRALYKLK
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| P38023 RNA polymerase sigma factor SigA1 | 8.6e-64 | 38.57 | Show/hide |
Query: AVKSTRLQDRRSKRRR----VPKHVTTIHETYNLRGKDTRRKTNENFD-------------PNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENV
A+K + +RS R++ V + TTI T ++ D E+ D D +RL+L +LL EE EL QI DL+ LE +
Subjt: AVKSTRLQDRRSKRRR----VPKHVTTIHETYNLRGKDTRRKTNENFD-------------PNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENV
Query: KARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQ
+ L Q R P+ EWA A+ + +L R +++K++ +NLR+VV IAKKY RGLS DL+QEGSLGL+++ EKF + G +F+TYA WWIRQ
Subjt: KARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQ
Query: SIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQE-ITADSEVDTPDVSVE
+I +AI + SRTIRLP ++Y + ++ + +E KP++EE+A + +T+E+L + +++P SL+ P+ ++D+ + I AD E TP+ V
Subjt: SIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQE-ITADSEVDTPDVSVE
Query: RELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLK
+ L+R + +LS LSP+ER ++RLRYG++DG+ KTL EIG +F +++ER+RQ+E +AL KL+
Subjt: RELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLK
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| P74565 RNA polymerase sigma factor SigA | 1.0e-56 | 36.63 | Show/hide |
Query: DPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAI--------------------------------GITCQHLQSQ
D +R++L +LL +EE EL QI DL+ LE ++ L Q R+P+ +EW + + ++ ++ SQ
Subjt: DPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAI--------------------------------GITCQHLQSQ
Query: ------------LHCFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENV
L R +++K++ +NLR+VV IAKKY RGLS DL+QEGSLGL+++ EKF + G +F+TYA WWIRQ+I +AI + SRTIRLP ++
Subjt: ------------LHCFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENV
Query: YGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQE-ITADSEVDTPDVSVERELMRRHIRNLLSILSPKE
Y + ++ + +E KP++EE+A + +T+E+L + +++P SL+ P+ ++D+ + I AD E TP+ V + L+R + N+L LSP+E
Subjt: YGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQE-ITADSEVDTPDVSVERELMRRHIRNLLSILSPKE
Query: RRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLK
R ++RLRYG++DG+ KTL EIG +F +++ER+RQ+E +AL KL+
Subjt: RRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLK
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 1.3e-149 | 55.97 | Show/hide |
Query: AVYMLHDQATP-----------ARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQ
+V MLHDQ T +R+F S + QE E RP S L+DD+TSQ+TL+RR + VS E + +L H W L+S S
Subjt: AVYMLHDQATP-----------ARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQ
Query: MGEYKISSVEKQPNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESEL-VGTNID---SSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTI
E K+ +V L + E DV+ALA+KALSASKQAA LV+++E NI S+SSS S ++G V+S R +RR+K RR PK
Subjt: MGEYKISSVEKQPNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESEL-VGTNID---SSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTI
Query: HETYNLRGKDTRRKTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREK
E Y + ++K + D +D L+LFLWGPETK+LLT +EE+ELI IQ L+ LE VK +L+SQ G EPT+ EWAEA+GI+ L+S +H R SREK
Subjt: HETYNLRGKDTRRKTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREK
Query: LINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKP
LI ANLR+VVHIAK+YQ RGL+ DLLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK+IF++SRTIRLPENVY LLGKV+EA+ V+EGNY+P
Subjt: LINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKP
Query: SKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGN
SKEELA HVG++ E+LDKLL+ +R P S+QQP+W+DQDTTFQEIT DS ++TP +SV ++LMR H+RNLL++LSPKERRII+LR+GI+ GK+++L EIG
Subjt: SKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGN
Query: MFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL
++GLSKERVRQLE+RALY+LK+ NS GL AYADLL
Subjt: MFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 8.5e-67 | 36.63 | Show/hide |
Query: IALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKE-----GIAVKSTRLQDRRSKRRR-VPKHVTTIHETYNLRGKDTRRKTNENFDPNDPLRLF
+A++ + + K AS E +G +++S E E +AV+STR +R+++R + + K + I +R + D NDPLR
Subjt: IALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKE-----GIAVKSTRLQDRRSKRRR-VPKHVTTIHETYNLRGKDTRRKTNENFDPNDPLRLF
Query: LWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQ
+ KLLTV+EE EL IQDL+ LE ++ L + GR+PT +WA A G+ + L+ ++H + ++K+I +N+R+V+ IAK YQG G++L DL+Q
Subjt: LWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQ
Query: EGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRS
EG GL++ EKF G +F+TYA+WWI+Q++RK++ + SR IRLP ++ +V EA+ E P EE+A G++++RL +L + PRS
Subjt: EGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRS
Query: LQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQG
L Q + +Q+ E+ AD E T + + +E MR+ + +L L +E+++IR R+G+EDG+ KTL EIG M G+S+ERVRQ+E+ A KLK +
Subjt: LQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQG
Query: LGAY
L Y
Subjt: LGAY
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| AT1G64860.1 sigma factor A | 1.3e-30 | 28.6 | Show/hide |
Query: ISSVEKQ--PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLR
++S EK PN T + +E+E D L +S S +A L+++S L S + S EK AV S +++++P +T + R
Subjt: ISSVEKQ--PNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESELVGTNIDSSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLR
Query: GKDTRRKTN-------ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREK
++KTN + +R ++ G ++ +L+ E L +I+ + L++ K+RL+ + G EP+ + A ++ I+ LQ+ L ++REK
Subjt: GKDTRRKTN-------ENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREK
Query: LINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKP
L +N+R+V+ IA++Y G + DL+Q G +GL++ +EKF G R +TY YWWIRQ + +A+ ++SRT+RLP +++ LG + AK ++E P
Subjt: LINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKP
Query: SKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQD----TTFQEITADSEVD-TPDVSVERELMRRHIRNLLS-ILSPKERRIIRLRYGIEDGKEKT
S + +A + ++ +++ SL + + + T AD+ ++ P + ++ + L+S L +E+ IIRL YG+ D + T
Subjt: SKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQD----TTFQEITADSEVD-TPDVSVERELMRRHIRNLLS-ILSPKERRIIRLRYGIEDGKEKT
Query: LLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGA
+I GLS+ERVRQ+ AL KLK + + A
Subjt: LLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGA
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| AT2G36990.1 RNApolymerase sigma-subunit F | 9.5e-151 | 55.97 | Show/hide |
Query: AVYMLHDQATP-----------ARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQ
+V MLHDQ T +R+F S + QE E RP S L+DD+TSQ+TL+RR + VS E + +L H W L+S S
Subjt: AVYMLHDQATP-----------ARYFSTSFIPQEQHHECRPQSQILKDDKTSQMTLDRRLIERSVSIDEGSRIGHDHLVWELKHQAAEWPGLLSSWPSLQ
Query: MGEYKISSVEKQPNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESEL-VGTNID---SSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTI
E K+ +V L + E DV+ALA+KALSASKQAA LV+++E NI S+SSS S ++G V+S R +RR+K RR PK
Subjt: MGEYKISSVEKQPNNTSRREILVEDEPEDVIALAKKALSASKQAASLVEESEL-VGTNID---SSSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTI
Query: HETYNLRGKDTRRKTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREK
E Y + ++K + D +D L+LFLWGPETK+LLT +EE+ELI IQ L+ LE VK +L+SQ G EPT+ EWAEA+GI+ L+S +H R SREK
Subjt: HETYNLRGKDTRRKTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREK
Query: LINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKP
LI ANLR+VVHIAK+YQ RGL+ DLLQEGS+GLMKSVEKFKPQ+GCRFATYAYWWIRQSIRK+IF++SRTIRLPENVY LLGKV+EA+ V+EGNY+P
Subjt: LINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKP
Query: SKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGN
SKEELA HVG++ E+LDKLL+ +R P S+QQP+W+DQDTTFQEIT DS ++TP +SV ++LMR H+RNLL++LSPKERRII+LR+GI+ GK+++L EIG
Subjt: SKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGN
Query: MFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL
++GLSKERVRQLE+RALY+LK+ NS GL AYADLL
Subjt: MFGLSKERVRQLENRALYKLKRCCNSQGLGAYADLL
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| AT3G53920.1 RNApolymerase sigma-subunit C | 2.0e-39 | 29.35 | Show/hide |
Query: QEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEK
+ E+E+ ++ + +E ++ +L+ + G+ +L WA A G+ + L LH R++L+ + +V+ +A+ Y+G G++ DL+Q G +G+++ E+
Subjt: QEESELIVQIQDLMILENVKARLQSQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEK
Query: FKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEA-KNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDT
F G +F+TY +WIR+S+ + H+R + +P ++ + + +A K G + EE+A G +V+++ ++ S+ + V T
Subjt: FKPQAGCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEA-KNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDT
Query: TFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY
F E T D+ +++P+ +V R+ RR I +LL L P+E++++ LRYG++D + K+L EIG + +SKE +R++E RA+ KL+ N++ L Y
Subjt: TFQEITADSEVDTPDVSVERELMRRHIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY
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| AT5G13730.1 sigma factor 4 | 2.1e-41 | 33.15 | Show/hide |
Query: SSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQ
SS EK GI + R +R +RRRV E N G + +T + + + G L+ EE +L + +++ LEN+ ++
Subjt: SSSSSSEEKEGIAVKSTRLQDRRSKRRRVPKHVTTIHETYNLRGKDTRRKTNENFDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILENVKARLQ
Query: SQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKA
E V A G + L + +REK+ R+VV IA YQG+GL+L DL+QEGS+GL++ E+F P G + +TY YWWI+Q+I +A
Subjt: SQFGREPTLVEWAEAIGITCQHLQSQLHCFRVSREKLINANLRMVVHIAKKYQGRGLSLHDLLQEGSLGLMKSVEKFKPQAGCRFATYAYWWIRQSIRKA
Query: IFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRR
I SR ++LP +++ L KV EA N R+ +PS EE+A H+ + V + + SR P SL + + T QEI + P+ V+RE M+
Subjt: IFEHSRTIRLPENVYGLLGKVTEAKNFFVREGNYKPSKEELAAHVGITVERLDKLLFMSRIPRSLQQPVWADQDTTFQEITADSEVDTPDVSVERELMRR
Query: HIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY
I LL L+ +E R++ L +G+ + EIG LS+ERVRQ+ AL KL+ N L Y
Subjt: HIRNLLSILSPKERRIIRLRYGIEDGKEKTLLEIGNMFGLSKERVRQLENRALYKLKRCCNSQGLGAY
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