; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC01g0575 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC01g0575
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionHistone H2B
Genome locationMC01:12080299..12080688
RNA-Seq ExpressionMC01g0575
SyntenyMC01g0575
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000558 - Histone H2B
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV69663.1 Histone domain-containing protein [Cephalotus follicularis]4.98e-7192.37Show/hide
Query:  PRAEKK-PAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE
        P+AEKK PAEKAPA+KKPRAEKKLPK+A+ EKKKK+ KKSVETYK+Y+FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE
Subjt:  PRAEKK-PAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE

Query:  IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
        IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

XP_012090439.2 LOW QUALITY PROTEIN: probable histone H2B.3 [Jatropha curcas]1.92e-7193.75Show/hide
Query:  AEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
        AEKKPAEKAPAEKKPRAEKKLPK+   +KKKKK KKSVETYK+Y+FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
Subjt:  AEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT

Query:  AVRLVLPGELAKHAVSEGTKAVTKFTSS
        AVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  AVRLVLPGELAKHAVSEGTKAVTKFTSS

XP_021648882.1 probable histone H2B.3 [Hevea brasiliensis]6.69e-7293.75Show/hide
Query:  AEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
        AEKKPAEKAPAEKKPRAEKKLPK+ SS+KK+KK KKSVETYK+Y+FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQT
Subjt:  AEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT

Query:  AVRLVLPGELAKHAVSEGTKAVTKFTSS
        AVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  AVRLVLPGELAKHAVSEGTKAVTKFTSS

XP_022143720.1 probable histone H2B.3 [Momordica charantia]1.84e-77100Show/hide
Query:  PRAEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI
        PRAEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI
Subjt:  PRAEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI

Query:  QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
        QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  QTAVRLVLPGELAKHAVSEGTKAVTKFTSS

XP_038882933.1 probable histone H2B.3 [Benincasa hispida]1.46e-7397.67Show/hide
Query:  AEKKPAEKAPA-EKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ
        AEKKPAEKAPA EKKPRAEKKLPKDASSEKKKKKMKKSVETYK+Y+FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ
Subjt:  AEKKPAEKAPA-EKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ

Query:  TAVRLVLPGELAKHAVSEGTKAVTKFTSS
        TAVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  TAVRLVLPGELAKHAVSEGTKAVTKFTSS

TrEMBL top hitse value%identityAlignment
A0A1Q3BPN8 Histone H2B2.41e-7192.37Show/hide
Query:  PRAEKK-PAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE
        P+AEKK PAEKAPA+KKPRAEKKLPK+A+ EKKKK+ KKSVETYK+Y+FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE
Subjt:  PRAEKK-PAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE

Query:  IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
        IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

A0A1R3GXR2 Histone H2B2.75e-7192.19Show/hide
Query:  AEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
        AEKKPAEKAPAEKKPRAEKK+PK+  ++KKKKK KKSVETYK+Y+FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQT
Subjt:  AEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT

Query:  AVRLVLPGELAKHAVSEGTKAVTKFTSS
        AVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  AVRLVLPGELAKHAVSEGTKAVTKFTSS

A0A1R3IXE7 Histone H2B2.75e-7192.19Show/hide
Query:  AEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
        AEKKPAEKAPAEKKPRAEKK+PK+  ++KKKKK KKSVETYK+Y+FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQT
Subjt:  AEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT

Query:  AVRLVLPGELAKHAVSEGTKAVTKFTSS
        AVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  AVRLVLPGELAKHAVSEGTKAVTKFTSS

A0A4U5R0H5 Histone H2B2.84e-7189.78Show/hide
Query:  PRAEKKPAEK-------APAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKP
        P+AEKKPAEK       APAEKKPRAEKKLPK+ +SEKKKKK KKSVETYK+Y+FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKP
Subjt:  PRAEKKPAEK-------APAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKP

Query:  TITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
        TITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  TITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

A0A6J1CPK2 Histone H2B8.91e-78100Show/hide
Query:  PRAEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI
        PRAEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI
Subjt:  PRAEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI

Query:  QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
        QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  QTAVRLVLPGELAKHAVSEGTKAVTKFTSS

SwissProt top hitse value%identityAlignment
O65819 Histone H2B.3 (Fragment)1.2e-5186.67Show/hide
Query:  AEKKP------AEKAPAEKKPRAEKKLPKDASS-EKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTI
        AEKKP      AEKAPAEKKP+A KKLPKDA++ +KKKK+ KK+VETYK+Y+FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTI
Subjt:  AEKKP------AEKAPAEKKPRAEKKLPKDASS-EKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTI

Query:  TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
        TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Q1S9I9 Probable histone H2B.11.2e-5185.61Show/hide
Query:  AEKKP--------AEKAPAEKKPRAEKKLPKD---ASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNK
        AEKKP        AEKAPAEKKP+A KKLPK+   A+ EKKKK+ KKSVETYK+Y+FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNK
Subjt:  AEKKP--------AEKAPAEKKPRAEKKLPKD---ASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNK

Query:  KPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
        KPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  KPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Q1SU99 Probable histone H2B.35.3e-5591.41Show/hide
Query:  AEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
        AEKKPAEKAPAEKKP+AEKK+ K+ SS+KKKK+ KKSVETYK+Y+FKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
Subjt:  AEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT

Query:  AVRLVLPGELAKHAVSEGTKAVTKFTSS
        AVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  AVRLVLPGELAKHAVSEGTKAVTKFTSS

Q9LFF6 Histone H2B.81.9e-5288.28Show/hide
Query:  AEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
        A KKPAEKAPAEK P+AEKK+ K+  SEKKKKK KK++ETYK+Y+FKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
Subjt:  AEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT

Query:  AVRLVLPGELAKHAVSEGTKAVTKFTSS
        AVRLVLPGEL+KHAVSEGTKAVTKFTSS
Subjt:  AVRLVLPGELAKHAVSEGTKAVTKFTSS

Q9ZUS0 Histone H2B.45.5e-5289.84Show/hide
Query:  AEKKPAEKAPAEKKPRAEKKLPKDA-SSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ
        AEKKPA KAPAEK P+AEKK+ KDA  SEKKKKK KKSVETYK+Y+FKVLKQVHPD+GIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQ
Subjt:  AEKKPAEKAPAEKKPRAEKKLPKDA-SSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ

Query:  TAVRLVLPGELAKHAVSEGTKAVTKFTS
        TAVRLVLPGELAKHAVSEGTKAVTKFTS
Subjt:  TAVRLVLPGELAKHAVSEGTKAVTKFTS

Arabidopsis top hitse value%identityAlignment
AT1G07790.1 Histone superfamily protein5.6e-5286.15Show/hide
Query:  PRAEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI
        P  E K AEKAPAEKKP+A KKLP   + +KKKK+ KK+VETYK+Y+FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREI
Subjt:  PRAEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREI

Query:  QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
        QTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  QTAVRLVLPGELAKHAVSEGTKAVTKFTSS

AT2G28720.1 Histone superfamily protein4.3e-5285.71Show/hide
Query:  PRAEKKPAEKAPAEKKPRAEKKLPKDASS---EKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS
        P  E+K AEKAPAEKKP+A KKLPK+A +   EKKKK++KKS ETYK+Y+FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITS
Subjt:  PRAEKKPAEKAPAEKKPRAEKKLPKDASS---EKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS

Query:  REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
        REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  REIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

AT2G37470.1 Histone superfamily protein3.9e-5389.84Show/hide
Query:  AEKKPAEKAPAEKKPRAEKKLPKDA-SSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ
        AEKKPA KAPAEK P+AEKK+ KDA  SEKKKKK KKSVETYK+Y+FKVLKQVHPD+GIS KAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQ
Subjt:  AEKKPAEKAPAEKKPRAEKKLPKDA-SSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ

Query:  TAVRLVLPGELAKHAVSEGTKAVTKFTS
        TAVRLVLPGELAKHAVSEGTKAVTKFTS
Subjt:  TAVRLVLPGELAKHAVSEGTKAVTKFTS

AT3G53650.1 Histone superfamily protein1.3e-5388.28Show/hide
Query:  AEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
        A KKPAEKAPAEK P+AEKK+ K+  SEKKKKK KK++ETYK+Y+FKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT
Subjt:  AEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT

Query:  AVRLVLPGELAKHAVSEGTKAVTKFTSS
        AVRLVLPGEL+KHAVSEGTKAVTKFTSS
Subjt:  AVRLVLPGELAKHAVSEGTKAVTKFTSS

AT5G59910.1 Histone superfamily protein9.6e-5286.36Show/hide
Query:  PRAEKKPAEKAPAEKKPRAEKKLPKDASS--EKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR
        P  EK  AEKAPAEKKP+A KKLPK+A +  +KKKK  KKSVETYK+Y+FKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSR
Subjt:  PRAEKKPAEKAPAEKKPRAEKKLPKDASS--EKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR

Query:  EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
        EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Subjt:  EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCAAGAGCAGAGAAGAAGCCAGCGGAGAAGGCGCCAGCCGAAAAGAAGCCTCGAGCGGAGAAGAAGCTCCCGAAAGACGCATCATCTGAAAAGAAGAAGAAGAAGATGAA
GAAGAGCGTGGAGACCTACAAGCTTTACCTCTTCAAGGTCTTGAAGCAGGTACATCCCGATATCGGAATTTCTAGCAAGGCCATGGGAATTATGAACAGTTTTATCAACG
ACATTTTCGAGAAGTTGGCTCAGGAGTCGTCGCGATTGGCTAGGTATAACAAGAAGCCGACGATCACCTCAAGGGAGATCCAAACGGCCGTGCGGCTGGTGCTTCCAGGT
GAGCTTGCGAAGCACGCCGTATCCGAGGGAACGAAGGCGGTAACCAAATTCACCAGCTCT
mRNA sequenceShow/hide mRNA sequence
CCAAGAGCAGAGAAGAAGCCAGCGGAGAAGGCGCCAGCCGAAAAGAAGCCTCGAGCGGAGAAGAAGCTCCCGAAAGACGCATCATCTGAAAAGAAGAAGAAGAAGATGAA
GAAGAGCGTGGAGACCTACAAGCTTTACCTCTTCAAGGTCTTGAAGCAGGTACATCCCGATATCGGAATTTCTAGCAAGGCCATGGGAATTATGAACAGTTTTATCAACG
ACATTTTCGAGAAGTTGGCTCAGGAGTCGTCGCGATTGGCTAGGTATAACAAGAAGCCGACGATCACCTCAAGGGAGATCCAAACGGCCGTGCGGCTGGTGCTTCCAGGT
GAGCTTGCGAAGCACGCCGTATCCGAGGGAACGAAGGCGGTAACCAAATTCACCAGCTCT
Protein sequenceShow/hide protein sequence
PRAEKKPAEKAPAEKKPRAEKKLPKDASSEKKKKKMKKSVETYKLYLFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPG
ELAKHAVSEGTKAVTKFTSS