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MC01g0613 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC01g0613
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionLysM domain-containing protein
Genome locationMC01:12564441..12564683
RNA-Seq ExpressionMC01g0613
SyntenyMC01g0613
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AES82004.1 peptidoglycan-binding LysM domain protein [Medicago truncatula]1.34e-2762.96Show/hide
Query:  VIVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH
        VI+++L+CC  +  E+ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NPHI+D DDVFPGLVIKI PF +
Subjt:  VIVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH

CAA2970656.1 Peptidoglycan-binding lysin domain-containing [Olea europaea subsp. europaea]1.06e-2664.1Show/hide
Query:  IVMVLSCCLCKS------QEMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFR
        +++VLSCC  +       Q+M   +E  CDEIYVVREGETLHTIS+KCGDP+I++ NPHI D DDVFPGLVIKITPF+
Subjt:  IVMVLSCCLCKS------QEMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFR

KAG6595189.1 hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia]1.03e-2676.56Show/hide
Query:  CKSQEMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH
        C SQE+ M     CDEIYVVREGETL +IS+KCGDPFI +HNPHIND DDVFPGLVIKITPF H
Subjt:  CKSQEMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH

RHN48654.1 putative LysM domain-containing protein [Medicago truncatula]1.73e-2762.96Show/hide
Query:  VIVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH
        VI+++L+CC  +  E+ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NPHI+D DDVFPGLVIKI PF +
Subjt:  VIVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH

XP_019186406.1 PREDICTED: uncharacterized protein LOC109181107 [Ipomoea nil]4.26e-2761.18Show/hide
Query:  IVMVLSCCLCKSQEMEMEMEM----------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHTI
        +++VLSCC     E   +M +           CDEIYVVREGETLHTISDKCGDPFI++ NPHI+D DDVFPGLVIKITPF H +
Subjt:  IVMVLSCCLCKSQEMEMEMEM----------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHTI

TrEMBL top hitse value%identityAlignment
A0A2G2VUW0 LysM domain-containing protein6.66e-2762.5Show/hide
Query:  IVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH
        I++VLSCC     + +  ++M       ACDEIYVV+EGETLHTIS+KCGDPFI++ NPHI+D DDVFPGLVIKITPF++
Subjt:  IVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH

A0A2G3BGH4 LysM domain-containing protein6.66e-2762.5Show/hide
Query:  IVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH
        I++VLSCC     + +  ++M       ACDEIYVV+EGETLHTIS+KCGDPFI++ NPHI+D DDVFPGLVIKITPF++
Subjt:  IVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH

A0A396HA20 Putative LysM domain-containing protein8.37e-2862.96Show/hide
Query:  VIVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH
        VI+++L+CC  +  E+ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NPHI+D DDVFPGLVIKI PF +
Subjt:  VIVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH

A0A5N6LJ20 Uncharacterized protein6.07e-2763.75Show/hide
Query:  VIVMVLSCCLCKSQEMEMEMEM------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH
        VI++VLSCC   + E E  ++        CDEIYVVREGETLHTI DKCGDP+I++ NPHI+D DDVFPGLVIKITPF++
Subjt:  VIVMVLSCCLCKSQEMEMEMEM------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH

G7L607 Peptidoglycan-binding LysM domain protein6.47e-2862.96Show/hide
Query:  VIVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH
        VI+++L+CC  +  E+ +EM+        ACDEIYVVREGETLHTIS+KCGDPFI++ NPHI+D DDVFPGLVIKI PF +
Subjt:  VIVMVLSCCLCKSQEMEMEMEM-------ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein1.6e-1773.47Show/hide
Query:  ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITP
        ACDEIY V+EGETL TIS+KCGDP+I++ NPHI+D DD+FPGL+I+ITP
Subjt:  ACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITP

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein2.8e-1761.02Show/hide
Query:  CKSQEMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKI
        C+    +  ME  C+E+YVV EG+TLH+IS+KCGDPFI++ NPHI+D DDVFPGL+IK+
Subjt:  CKSQEMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein3.9e-1977.55Show/hide
Query:  CDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPF
        C+EIY+V EGETLHTI DKCGDPFI++ NPHI+D DDVFPGLV+KI PF
Subjt:  CDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGATTGTTATGGTTTTGAGCTGCTGCTTATGCAAGAGCCAAGAGATGGAGATGGAGATGGAGATGGCGTGTGATGAGATATATGTGGTTCGTGAAGGAGAAACTTTGCA
CACAATCAGTGACAAATGTGGAGATCCTTTTATTCTCCAACACAATCCTCATATTAATGATTCTGATGATGTTTTTCCTGGTTTGGTCATCAAGATCACTCCTTTTCGCC
ATACTATTCATCCCAATTTTCTC
mRNA sequenceShow/hide mRNA sequence
GTGATTGTTATGGTTTTGAGCTGCTGCTTATGCAAGAGCCAAGAGATGGAGATGGAGATGGAGATGGCGTGTGATGAGATATATGTGGTTCGTGAAGGAGAAACTTTGCA
CACAATCAGTGACAAATGTGGAGATCCTTTTATTCTCCAACACAATCCTCATATTAATGATTCTGATGATGTTTTTCCTGGTTTGGTCATCAAGATCACTCCTTTTCGCC
ATACTATTCATCCCAATTTTCTC
Protein sequenceShow/hide protein sequence
VIVMVLSCCLCKSQEMEMEMEMACDEIYVVREGETLHTISDKCGDPFILQHNPHINDSDDVFPGLVIKITPFRHTIHPNFL