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MC01g0633 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC01g0633
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionSmall nuclear ribonucleoprotein G
Genome locationMC01:12680190..12680504
RNA-Seq ExpressionMC01g0633
SyntenyMC01g0633
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0034719 - SMN-Sm protein complex (cellular component)
GO:0043186 - P granule (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR044641 - Sm-like protein Lsm7/SmG
IPR034098 - Small nuclear ribonucleoprotein G
IPR010920 - LSM domain superfamily
IPR001163 - LSM domain, eukaryotic/archaea-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0830231.1 hypothetical protein [Gossypium armourianum]1.70e-3293.65Show/hide
Query:  FAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        FAVKLNANR+V+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV R Q
Subjt:  FAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

XP_004143329.1 probable small nuclear ribonucleoprotein G [Cucumis sativus]1.72e-3290.91Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        D    +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

XP_022132404.1 probable small nuclear ribonucleoprotein G [Momordica charantia]2.09e-3392.42Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        D    +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

XP_028784792.1 probable small nuclear ribonucleoprotein G [Prosopis alba]6.00e-3389.39Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        D    +KLNANR++IGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

XP_030529903.1 probable small nuclear ribonucleoprotein G [Rhodamnia argentea]1.67e-3289.23Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        D +  +KLNANR+V+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT

TrEMBL top hitse value%identityAlignment
A0A0A0KHH9 Small nuclear ribonucleoprotein G8.34e-3390.91Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        D    +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A1S3CHS7 Small nuclear ribonucleoprotein G8.34e-3390.91Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        D    +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A5D3C6A2 Small nuclear ribonucleoprotein G8.34e-3390.91Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        D    +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A6J1BSY9 Small nuclear ribonucleoprotein G1.01e-3392.42Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        D    +KLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

A0A7J9J770 Small nuclear ribonucleoprotein G8.25e-3393.65Show/hide
Query:  FAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ
        FAVKLNANR+V+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV R Q
Subjt:  FAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ

SwissProt top hitse value%identityAlignment
O82221 Probable small nuclear ribonucleoprotein G7.1e-2483.08Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        D    +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT

P24715 Probable small nuclear ribonucleoprotein G3.9e-2282.26Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV
        D    + L ANR+++GTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEALEPV
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV

Q3ZBL0 Small nuclear ribonucleoprotein G1.5e-1055.56Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV
        D   ++KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EALE V
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV

Q54RX0 Probable small nuclear ribonucleoprotein G5.3e-1157.38Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVE-VNGNEKTDIGMVVIRGNSVVTVEALE
        D   A+KLN NR V G LRGFD FMN+ + +TVE V+  EK +IGMV+IRGNS++ +E LE
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVE-VNGNEKTDIGMVVIRGNSVVTVEALE

Q9VXE0 Probable small nuclear ribonucleoprotein G1.1e-1160.32Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV
        D    +KLN  R V G LRGFD FMN+V+D+TV E   N K +IGMVVIRGNS+V VEAL+ V
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV

Arabidopsis top hitse value%identityAlignment
AT2G03870.1 Small nuclear ribonucleoprotein family protein2.9e-0438.33Show/hide
Query:  VKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV
        VKL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  VKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV

AT2G03870.2 Small nuclear ribonucleoprotein family protein2.9e-0438.33Show/hide
Query:  VKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV
        VKL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  VKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV

AT2G23930.1 probable small nuclear ribonucleoprotein G5.1e-2583.08Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        D    +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT

AT2G23930.2 probable small nuclear ribonucleoprotein G5.1e-2583.08Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        D    +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT

AT3G11500.1 Small nuclear ribonucleoprotein family protein6.6e-2581.54Show/hide
Query:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT
        D    +KLNANR+V+GTLRGFDQFMNLVVDNTVEVNG++KTDIGMVVIRGNS+VTVEALEPV R+
Subjt:  DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATTTACATTTTGCAGTAAAACTCAATGCCAACCGCTTGGTAATTGGAACCCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGG
CAATGAGAAAACTGATATTGGCATGGTGGTGATTAGGGGCAATAGTGTTGTCACCGTTGAAGCACTTGAACCTGTGAACAGGACGCAG
mRNA sequenceShow/hide mRNA sequence
GATTTACATTTTGCAGTAAAACTCAATGCCAACCGCTTGGTAATTGGAACCCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGG
CAATGAGAAAACTGATATTGGCATGGTGGTGATTAGGGGCAATAGTGTTGTCACCGTTGAAGCACTTGAACCTGTGAACAGGACGCAG
Protein sequenceShow/hide protein sequence
DLHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRTQ