; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC01g0661 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC01g0661
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionCOPII coat assembly protein SEC16, putative
Genome locationMC01:12862700..12863128
RNA-Seq ExpressionMC01g0661
SyntenyMC01g0661
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK07441.1 putative COPII coat assembly protein SEC16 [Cucumis melo var. makuwa]1.01e-6274.48Show/hide
Query:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPST--AAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSY
        P LRR   +P   S+ M PP+  V PPPPPSPI+L LLSFKSSSQSYTSLKDILPS   AAVNSPTAAS  NS YEISIRNRLVKQAAWAYLQPMSASSY
Subjt:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPST--AAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSY

Query:  SAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL
        SAGPNFFHR CLR S GNPI  C GFI  ++IPAI+R  R CICL
Subjt:  SAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL

XP_008462609.1 PREDICTED: uncharacterized protein LOC103500927 [Cucumis melo]5.03e-6374.48Show/hide
Query:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPST--AAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSY
        P LRR   +P   S+ M PP+  V PPPPPSPI+L LLSFKSSSQSYTSLKDILPS   AAVNSPTAAS  NS YEISIRNRLVKQAAWAYLQPMSASSY
Subjt:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPST--AAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSY

Query:  SAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL
        SAGPNFFHR CLR S GNPI  C GFI  ++IPAI+R  R CICL
Subjt:  SAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL

XP_011657724.1 early nodulin-20 [Cucumis sativus]7.63e-6373.29Show/hide
Query:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPST----AAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSAS
        P LRR   +P   S+ M PP+  V PPPPPSPI+L LLSFKSSSQSYTSLKDILPS     AAVNSPTAAS  NS YEISIRNRLVKQAAWAYLQPMSAS
Subjt:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPST----AAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSAS

Query:  SYSAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCIC
        SYSAGPNFFHR CLR S GNPI  C GFIR +++PAI+R  R CIC
Subjt:  SYSAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCIC

XP_022132713.1 uncharacterized protein LOC111005510 [Momordica charantia]8.63e-94100Show/hide
Query:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPSTAAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSYSA
        PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPSTAAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSYSA
Subjt:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPSTAAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSYSA

Query:  GPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL
        GPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL
Subjt:  GPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL

XP_038883302.1 uncharacterized protein LOC120074291 [Benincasa hispida]1.53e-6579.31Show/hide
Query:  LRRRNSIPIPSSAAMTPPDGTVF---PPPPPSPIDLRLLSFKSSSQSYTSLKDILPS-TAAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSY
        LR R  IP   S+ M PP+GTV    PPPPPSPI+LRLLSFKSSSQSYTSLKDILPS +AAVNSPTAAS  NSGYEISIRNRLVKQAAWAYLQPMSASSY
Subjt:  LRRRNSIPIPSSAAMTPPDGTVF---PPPPPSPIDLRLLSFKSSSQSYTSLKDILPS-TAAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSY

Query:  SAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL
        SAGPNFFHR  LR S  NPI  CLGFIRGT+IPAI+RV R CICL
Subjt:  SAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL

TrEMBL top hitse value%identityAlignment
A0A0A0KHJ9 Uncharacterized protein3.69e-6373.29Show/hide
Query:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPST----AAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSAS
        P LRR   +P   S+ M PP+  V PPPPPSPI+L LLSFKSSSQSYTSLKDILPS     AAVNSPTAAS  NS YEISIRNRLVKQAAWAYLQPMSAS
Subjt:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPST----AAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSAS

Query:  SYSAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCIC
        SYSAGPNFFHR CLR S GNPI  C GFIR +++PAI+R  R CIC
Subjt:  SYSAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCIC

A0A1S3CHC6 uncharacterized protein LOC1035009272.44e-6374.48Show/hide
Query:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPST--AAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSY
        P LRR   +P   S+ M PP+  V PPPPPSPI+L LLSFKSSSQSYTSLKDILPS   AAVNSPTAAS  NS YEISIRNRLVKQAAWAYLQPMSASSY
Subjt:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPST--AAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSY

Query:  SAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL
        SAGPNFFHR CLR S GNPI  C GFI  ++IPAI+R  R CICL
Subjt:  SAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL

A0A5A7SL81 Putative COPII coat assembly protein SEC162.44e-6374.48Show/hide
Query:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPST--AAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSY
        P LRR   +P   S+ M PP+  V PPPPPSPI+L LLSFKSSSQSYTSLKDILPS   AAVNSPTAAS  NS YEISIRNRLVKQAAWAYLQPMSASSY
Subjt:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPST--AAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSY

Query:  SAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL
        SAGPNFFHR CLR S GNPI  C GFI  ++IPAI+R  R CICL
Subjt:  SAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL

A0A5D3C6C7 Putative COPII coat assembly protein SEC164.91e-6374.48Show/hide
Query:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPST--AAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSY
        P LRR   +P   S+ M PP+  V PPPPPSPI+L LLSFKSSSQSYTSLKDILPS   AAVNSPTAAS  NS YEISIRNRLVKQAAWAYLQPMSASSY
Subjt:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPST--AAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSY

Query:  SAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL
        SAGPNFFHR CLR S GNPI  C GFI  ++IPAI+R  R CICL
Subjt:  SAGPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL

A0A6J1BX34 uncharacterized protein LOC1110055104.18e-94100Show/hide
Query:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPSTAAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSYSA
        PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPSTAAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSYSA
Subjt:  PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPSTAAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSYSA

Query:  GPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL
        GPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL
Subjt:  GPNFFHRVCLRLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52520.1 unknown protein3.4e-1051.19Show/hide
Query:  IDLRLLSFKSSSQS----YTSLKDILPSTA-AVNSPT---AASAPNSGYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFFHRV
        +DL L+S   SS+     YTSLKDILPS++  V+SP    A ++  SG  I+IRNRLVKQAA +YLQP S  + S+ P+F  RV
Subjt:  IDLRLLSFKSSSQS----YTSLKDILPSTA-AVNSPT---AASAPNSGYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFFHRV

AT5G06280.1 unknown protein2.8e-1242.06Show/hide
Query:  PVLRRRNSIPIPSSAAMTPPDGTV-FPPPPPSPIDLRLLSFKSSS-QSYTSLKDIL--PSTAAVNSPTAASA-----PNSGYEISIRNRLVKQAAWAYLQ
        P  + R +  I +   +TPP+        PPS  D  L+S K SS  +YTSL+DI+  P  +++N P+   +       +  +ISIRNRLVKQAA +YLQ
Subjt:  PVLRRRNSIPIPSSAAMTPPDGTV-FPPPPPSPIDLRLLSFKSSS-QSYTSLKDIL--PSTAAVNSPTAASA-----PNSGYEISIRNRLVKQAAWAYLQ

Query:  P--MSASSYSAGPNFFHRVCLRLSAG
        P  +++S  SAG  FF RV L LSAG
Subjt:  P--MSASSYSAGPNFFHRVCLRLSAG

AT5G06280.3 unknown protein2.8e-1242.06Show/hide
Query:  PVLRRRNSIPIPSSAAMTPPDGTV-FPPPPPSPIDLRLLSFKSSS-QSYTSLKDIL--PSTAAVNSPTAASA-----PNSGYEISIRNRLVKQAAWAYLQ
        P  + R +  I +   +TPP+        PPS  D  L+S K SS  +YTSL+DI+  P  +++N P+   +       +  +ISIRNRLVKQAA +YLQ
Subjt:  PVLRRRNSIPIPSSAAMTPPDGTV-FPPPPPSPIDLRLLSFKSSS-QSYTSLKDIL--PSTAAVNSPTAASA-----PNSGYEISIRNRLVKQAAWAYLQ

Query:  P--MSASSYSAGPNFFHRVCLRLSAG
        P  +++S  SAG  FF RV L LSAG
Subjt:  P--MSASSYSAGPNFFHRVCLRLSAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCAGTTCTCCGCCGCAGAAACTCGATTCCGATTCCCTCCTCCGCCGCCATGACTCCGCCAGACGGCACCGTTTTCCCCCCTCCGCCGCCCTCGCCGATTGACTTGAGGCT
CCTCTCCTTCAAGTCCTCCTCCCAATCCTACACCTCCCTCAAGGACATCCTCCCCTCCACCGCCGCCGTCAACTCTCCGACCGCCGCCTCCGCCCCTAACTCCGGCTACG
AAATCTCGATCCGCAACCGCCTCGTTAAGCAGGCCGCCTGGGCTTACCTCCAGCCTATGTCCGCCTCTTCCTATTCCGCCGGCCCTAATTTTTTCCACCGTGTCTGCCTC
CGCCTCTCCGCCGGAAATCCGATCACCGATTGTCTCGGATTCATCAGAGGGACTGTAATCCCGGCCATTGTCCGAGTTATTCGCCTCTGCATTTGCTTG
mRNA sequenceShow/hide mRNA sequence
CCAGTTCTCCGCCGCAGAAACTCGATTCCGATTCCCTCCTCCGCCGCCATGACTCCGCCAGACGGCACCGTTTTCCCCCCTCCGCCGCCCTCGCCGATTGACTTGAGGCT
CCTCTCCTTCAAGTCCTCCTCCCAATCCTACACCTCCCTCAAGGACATCCTCCCCTCCACCGCCGCCGTCAACTCTCCGACCGCCGCCTCCGCCCCTAACTCCGGCTACG
AAATCTCGATCCGCAACCGCCTCGTTAAGCAGGCCGCCTGGGCTTACCTCCAGCCTATGTCCGCCTCTTCCTATTCCGCCGGCCCTAATTTTTTCCACCGTGTCTGCCTC
CGCCTCTCCGCCGGAAATCCGATCACCGATTGTCTCGGATTCATCAGAGGGACTGTAATCCCGGCCATTGTCCGAGTTATTCGCCTCTGCATTTGCTTG
Protein sequenceShow/hide protein sequence
PVLRRRNSIPIPSSAAMTPPDGTVFPPPPPSPIDLRLLSFKSSSQSYTSLKDILPSTAAVNSPTAASAPNSGYEISIRNRLVKQAAWAYLQPMSASSYSAGPNFFHRVCL
RLSAGNPITDCLGFIRGTVIPAIVRVIRLCICL