CuGenDBv2

Gene ID	MC01g0711
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	30S ribosomal protein S11, chloroplastic
Genome location	MC01:13239046..13239216
RNA-Seq Expression	MC01g0711
Synteny	MC01g0711
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001971 - Ribosomal protein S11 IPR036967 - Ribosomal protein S11 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

GEV78128.1 ribosomal protein S11, chloroplastic [Tanacetum cinerariifolium]

2.71e-22

80.7

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Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSA TYGF+GTRRGTPFA Q+AA NAI A+ DQGMQRAEVMIK PGL  DAALRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

QWY86723.1 ribosomal protein S11 [Prioria oxyphylla]

3.35e-22

82.46

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Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSA T GFKGTRRGTPFA Q+AA NAIW V DQGMQRAEVMIK PGL  DAALRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

XP_040943184.1 30S ribosomal protein S11, chloroplastic-like [Gossypium hirsutum]

5.46e-21

84.21

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Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSAST GFKGTRRGTPFA Q+AA NAI AV DQGMQRAEVMIK PGL  DAALRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

YP_009752191.1 ribosomal protein S11 [Linnaeosicyos amara]

1.92e-21

84.21

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Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSA T GFKGTRRGTPFA Q+AARNAI AV DQGMQRAEVMIK PGL  DAALRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

YP_009767040.1 ribosomal protein S11 [Tachigali costaricensis]

4.74e-22

82.46

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Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSA T GFKGTRRGTPFA Q+AA NAIW V DQGMQRAEVMIK PGL  DAALRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

TrEMBL top hits

e value

%identity

Alignment

A0A4P8F4U4 Ribosomal protein S11

3.75e-21

82.46

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Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSA + GFKGTRRGTPFA Q+AARNAI AV DQGMQRAEVMIK PGL  DAALRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

A0A5D2GPD3 Uncharacterized protein (Fragment)

3.20e-21

80.7

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Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSA TYGFKGTRRGTPFA Q+AARNAI AV DQGMQRAEVMIK P L  D +LRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

A0A5J5VX86 Uncharacterized protein (Fragment)

2.88e-21

80.7

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Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSA TYGFKGTRRGTPFA Q+AARNAI AV DQGMQRAEVMIK P L  D +LRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

A0A6H0E8A1 Ribosomal protein S11

2.30e-22

82.46

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Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSA T GFKGTRRGTPFA Q+AA NAIW V DQGMQRAEVMIK PGL  DAALRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

A0A6H0ETH3 30S ribosomal protein S11, chloroplastic

9.28e-22

84.21

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Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSA T GFKGTRRGTPFA Q+AARNAI AV DQGMQRAEVMIK PGL  DAALRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

SwissProt top hits

e value

%identity

Alignment

A0ZZ68 30S ribosomal protein S11, chloroplastic

3.3e-17

82.46

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Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSA T GFKGTRRGTPFA Q+AA NAI AV DQGMQRAEVMIK PGL  DAALRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

B2LMM6 30S ribosomal protein S11, chloroplastic

5.6e-17

80.7

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Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSA T GF+GTRRGTPFA Q+AA NAI AV DQGMQRAEVMIK PGL  DAALRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

Q09ME4 30S ribosomal protein S11, chloroplastic

5.6e-17

80.7

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Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSA T GF+GTRRGTPFA Q+AA NAI AV DQGMQRAEVMIK PGL  DAALRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

Q2L937 30S ribosomal protein S11, chloroplastic

3.3e-17

82.46

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Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSA T GFKGTRRGTPFA Q+AA NAI AV DQGMQRAEVMIK PGL  DAALRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

Q6EW19 30S ribosomal protein S11, chloroplastic

3.3e-17

82.46

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Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSA T GFKGTRRGTPFA Q+AA NAI AV DQGMQRAEVMIK PGL  DAALRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00750.1 ribosomal protein S11

2.6e-17

78.95

Show/hide

Query:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI
        WSSA T GF+GTRRGTPFA Q+AA NAI AV DQGMQRAEV IK PGL  DAALRAI
Subjt:  WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

Sequences

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CDS sequence

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TGGTCTTCTGCCAGTACTTATGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCTACTCAAAGCGCAGCAAGAAATGCTATTTGGGCAGTAGAGGATCAGGGTATGCA
ACGAGCGGAAGTCATGATAAAGAGTCCAGGTCTTAAAATAGATGCAGCATTAAGAGCCATT

mRNA sequence

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TGGTCTTCTGCCAGTACTTATGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCTACTCAAAGCGCAGCAAGAAATGCTATTTGGGCAGTAGAGGATCAGGGTATGCA
ACGAGCGGAAGTCATGATAAAGAGTCCAGGTCTTAAAATAGATGCAGCATTAAGAGCCATT

Protein sequence

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WSSASTYGFKGTRRGTPFATQSAARNAIWAVEDQGMQRAEVMIKSPGLKIDAALRAI

MC01g0711 (gene) of Bitter gourd (Dali-11) v1 genome