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MC01g0834 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC01g0834
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationMC01:14195045..14195296
RNA-Seq ExpressionMC01g0834
SyntenyMC01g0834
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132589.1 B3 domain-containing transcription factor VRN1-like isoform X1 [Momordica charantia]3.15e-3877.38Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
        IP+KFV +YGKFLSSS+ LKLPDG EWKVGLK  TNG+VWL+NGWH FAEHY L+HGSMLVLRLD  STF TLIF+ +GSEIEY
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY

XP_022132590.1 B3 domain-containing transcription factor VRN1-like isoform X2 [Momordica charantia]2.16e-3877.38Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
        IP+KFV +YGKFLSSS+ LKLPDG EWKVGLK  TNG+VWL+NGWH FAEHY L+HGSMLVLRLD  STF TLIF+ +GSEIEY
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY

XP_022132593.1 B3 domain-containing transcription factor VRN1-like [Momordica charantia]3.14e-3675Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
        IPKKFV DYGKFLS+S+ L+L DGMEWK+GL TA NG+VWL+NGWH FAEHY LE GS+LV R DG STFHT IFD TGSEI+Y
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY

XP_022132700.1 B3 domain-containing transcription factor VRN1-like [Momordica charantia]1.75e-53100Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
        IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY

XP_023003057.1 B3 domain-containing transcription factor VRN1-like isoform X3 [Cucurbita maxima]4.54e-3471.43Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
        IPKKFV+DYG+ LS+S+ LKLPDGMEWKVGL TA NG VWL+NGWH FAEHY LE GS+LV + DG STF T IFD +G E EY
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY

TrEMBL top hitse value%identityAlignment
A0A6J1BT74 B3 domain-containing transcription factor VRN1-like8.46e-54100Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
        IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY

A0A6J1BTG9 B3 domain-containing transcription factor VRN1-like isoform X11.52e-3877.38Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
        IP+KFV +YGKFLSSS+ LKLPDG EWKVGLK  TNG+VWL+NGWH FAEHY L+HGSMLVLRLD  STF TLIF+ +GSEIEY
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY

A0A6J1BU95 B3 domain-containing transcription factor VRN1-like isoform X21.04e-3877.38Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
        IP+KFV +YGKFLSSS+ LKLPDG EWKVGLK  TNG+VWL+NGWH FAEHY L+HGSMLVLRLD  STF TLIF+ +GSEIEY
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY

A0A6J1BWP5 B3 domain-containing transcription factor VRN1-like1.52e-3675Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
        IPKKFV DYGKFLS+S+ L+L DGMEWK+GL TA NG+VWL+NGWH FAEHY LE GS+LV R DG STFHT IFD TGSEI+Y
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY

A0A6J1KLC7 B3 domain-containing transcription factor VRN1-like isoform X32.20e-3471.43Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
        IPKKFV+DYG+ LS+S+ LKLPDGMEWKVGL TA NG VWL+NGWH FAEHY LE GS+LV + DG STF T IFD +G E EY
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY

SwissProt top hitse value%identityAlignment
Q10GM4 B3 domain-containing protein Os03g06221009.8e-1032.1Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSE
        +P +F  ++   +S  + LK P G  W +G+  +  G + LR+GW  F +   ++    L+ R  G S+F  LIFD +G E
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSE

Q851V5 Putative B3 domain-containing protein Os03g06216001.2e-0433.33Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSE
        IP KF R +   +S +I L+   G  + V +    N  V L +GW +F   + L  G  LV + +G      LIFD +G E
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSE

Q8L3W1 B3 domain-containing transcription factor VRN16.5e-1439.29Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
        +P KFV  +   LS ++ L +PDG  W+VGL+ A N  +W ++GW  F + Y +  G +L+ R +G S F   IF+ + SEI Y
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY

Q9XIB4 B3 domain-containing protein At1g494759.8e-1036.9Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
        +P +FVR +G  L+ ++ L+ P G +  + +K      VW   GW  FAE + L  G  L    +G S F  +IFD + SEIEY
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY

Arabidopsis top hitse value%identityAlignment
AT1G49475.1 AP2/B3-like transcriptional factor family protein6.9e-1136.9Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
        +P +FVR +G  L+ ++ L+ P G +  + +K      VW   GW  FAE + L  G  L    +G S F  +IFD + SEIEY
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY

AT3G18990.1 AP2/B3-like transcriptional factor family protein4.6e-1539.29Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY
        +P KFV  +   LS ++ L +PDG  W+VGL+ A N  +W ++GW  F + Y +  G +L+ R +G S F   IF+ + SEI Y
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY

AT5G66980.1 AP2/B3-like transcriptional factor family protein4.8e-0434.15Show/hide
Query:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGS---VWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATG
        IP  F+    K L     L    G  W V  KT        V+   GW +FA    LE G  LV   DG S F   IF   G
Subjt:  IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGS---VWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTCCGAAGAAGTTTGTAAGAGACTATGGAAAGTTTCTGTCAAGTTCCATATGTCTCAAGCTTCCCGATGGTATGGAATGGAAAGTGGGCTTAAAGACCGCCACAAACGG
CTCCGTTTGGCTGCGAAATGGCTGGCATACATTTGCGGAGCACTATTGTTTGGAGCATGGATCGATGTTGGTTCTTAGATTGGATGGAAAGTCGACTTTCCACACACTAA
TATTCGATGCAACTGGATCGGAGATCGAATAT
mRNA sequenceShow/hide mRNA sequence
ATTCCGAAGAAGTTTGTAAGAGACTATGGAAAGTTTCTGTCAAGTTCCATATGTCTCAAGCTTCCCGATGGTATGGAATGGAAAGTGGGCTTAAAGACCGCCACAAACGG
CTCCGTTTGGCTGCGAAATGGCTGGCATACATTTGCGGAGCACTATTGTTTGGAGCATGGATCGATGTTGGTTCTTAGATTGGATGGAAAGTCGACTTTCCACACACTAA
TATTCGATGCAACTGGATCGGAGATCGAATAT
Protein sequenceShow/hide protein sequence
IPKKFVRDYGKFLSSSICLKLPDGMEWKVGLKTATNGSVWLRNGWHTFAEHYCLEHGSMLVLRLDGKSTFHTLIFDATGSEIEY