; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC01g0836 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC01g0836
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionB3 domain-containing transcription factor VRN1-like isoform X2
Genome locationMC01:14205173..14205424
RNA-Seq ExpressionMC01g0836
SyntenyMC01g0836
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132589.1 B3 domain-containing transcription factor VRN1-like isoform X1 [Momordica charantia]2.04e-52100Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
        IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY

XP_022132590.1 B3 domain-containing transcription factor VRN1-like isoform X2 [Momordica charantia]1.25e-52100Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
        IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY

XP_022132700.1 B3 domain-containing transcription factor VRN1-like [Momordica charantia]2.77e-3877.38Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
        IP+KFV +YGKFLSSS+ LKLPDG EWKVGLK  TNG+VWL+NGWH FAEHY L+HGSMLVLRLD  STF TLIF+ +GSEIEY
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY

XP_023003056.1 B3 domain-containing transcription factor VRN1-like isoform X2 [Cucurbita maxima]8.22e-3369.05Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
        IP+KFV++YG+ LS+SVRLKLPDG EWKVGL    NG VWLQNGWH FAEHY L+ GS+LV + D  STFQT IF+PSG E EY
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY

XP_023003057.1 B3 domain-containing transcription factor VRN1-like isoform X3 [Cucurbita maxima]6.73e-3369.05Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
        IP+KFV++YG+ LS+SVRLKLPDG EWKVGL    NG VWLQNGWH FAEHY L+ GS+LV + D  STFQT IF+PSG E EY
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY

TrEMBL top hitse value%identityAlignment
A0A6J1BT74 B3 domain-containing transcription factor VRN1-like1.34e-3877.38Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
        IP+KFV +YGKFLSSS+ LKLPDG EWKVGLK  TNG+VWL+NGWH FAEHY L+HGSMLVLRLD  STF TLIF+ +GSEIEY
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY

A0A6J1BTG9 B3 domain-containing transcription factor VRN1-like isoform X19.89e-53100Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
        IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY

A0A6J1BU95 B3 domain-containing transcription factor VRN1-like isoform X26.06e-53100Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
        IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY

A0A6J1KLC7 B3 domain-containing transcription factor VRN1-like isoform X33.26e-3369.05Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
        IP+KFV++YG+ LS+SVRLKLPDG EWKVGL    NG VWLQNGWH FAEHY L+ GS+LV + D  STFQT IF+PSG E EY
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY

A0A6J1KN14 B3 domain-containing transcription factor VRN1-like isoform X23.98e-3369.05Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
        IP+KFV++YG+ LS+SVRLKLPDG EWKVGL    NG VWLQNGWH FAEHY L+ GS+LV + D  STFQT IF+PSG E EY
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY

SwissProt top hitse value%identityAlignment
Q10GM4 B3 domain-containing protein Os03g06221007.5e-1033.33Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSE
        +P +F   +   +S  V LK P GK W +G+  +  G + L++GW  F +   ++    L+ R    S+F  LIF+PSG E
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSE

Q2QMT6 B3 domain-containing protein LOC_Os12g400801.4e-0837.04Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSE
        IP KF   +G  +S +V+L+  +GK ++V +    N  V L++GW  FA  Y L+ G +LV     NS F+  I++PS  E
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSE

Q851V1 Putative B3 domain-containing protein Os03g06216001.7e-0633.33Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSE
        IP +F+  +G  +  S++L+   G  + V +    +G V LQ+GW  +   + LK G  LV +   +S  +TLIF+ SG E
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSE

Q8L3W1 B3 domain-containing transcription factor VRN12.9e-1441.67Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
        +P KFV ++   LS +V L +PDG  W+VGL+   N  +W Q+GW  F + Y ++ G +L+ R + NS F   IF  S SEI Y
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY

Q9XIB4 B3 domain-containing protein At1g494755.4e-0835.71Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
        +P +FV  +G  L+ +V L+ P G +  + +K      VW + GW  FAE + L  G  L    + +S F+ +IF+ S SEIEY
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY

Arabidopsis top hitse value%identityAlignment
AT1G49475.1 AP2/B3-like transcriptional factor family protein3.8e-0935.71Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
        +P +FV  +G  L+ +V L+ P G +  + +K      VW + GW  FAE + L  G  L    + +S F+ +IF+ S SEIEY
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY

AT3G18990.1 AP2/B3-like transcriptional factor family protein2.1e-1541.67Show/hide
Query:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY
        +P KFV ++   LS +V L +PDG  W+VGL+   N  +W Q+GW  F + Y ++ G +L+ R + NS F   IF  S SEI Y
Subjt:  IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTCCACAAAAGTTTGTTGAAGAATATGGGAAGTTTCTGTCAAGTTCCGTGCGTCTCAAGCTTCCCGACGGTAAGGAATGGAAAGTGGGTTTAAAGGCCACCACAAACGG
CGCCGTTTGGCTGCAAAATGGCTGGCATCCATTTGCGGAGCACTACCGTTTAAAACATGGGTCGATGTTGGTTCTTAGACTGGATGAAAATTCCACTTTCCAAACACTGA
TATTCGAGCCAAGTGGATCAGAGATCGAATAT
mRNA sequenceShow/hide mRNA sequence
ATTCCACAAAAGTTTGTTGAAGAATATGGGAAGTTTCTGTCAAGTTCCGTGCGTCTCAAGCTTCCCGACGGTAAGGAATGGAAAGTGGGTTTAAAGGCCACCACAAACGG
CGCCGTTTGGCTGCAAAATGGCTGGCATCCATTTGCGGAGCACTACCGTTTAAAACATGGGTCGATGTTGGTTCTTAGACTGGATGAAAATTCCACTTTCCAAACACTGA
TATTCGAGCCAAGTGGATCAGAGATCGAATAT
Protein sequenceShow/hide protein sequence
IPQKFVEEYGKFLSSSVRLKLPDGKEWKVGLKATTNGAVWLQNGWHPFAEHYRLKHGSMLVLRLDENSTFQTLIFEPSGSEIEY