CuGenDBv2

Gene ID	MC01g1008
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein SKIP34
Genome location	MC01:15643381..15643656
RNA-Seq Expression	MC01g1008
Synteny	MC01g1008
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008440533.1 PREDICTED: protein SKIP34 [Cucumis melo]

2.42e-42

82.29

Show/hide

Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH R LFRGS  PYQ+SVP+NG     DNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK

XP_011657944.1 protein SKIP34 [Cucumis sativus]

2.07e-43

83.33

Show/hide

Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH R LFRGSL PYQ+SVP+NG     DNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK

XP_022133249.1 protein SKIP34 [Momordica charantia]

3.29e-55

100

Show/hide

Query:  MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK

XP_022978829.1 protein SKIP34 [Cucurbita maxima]

2.07e-43

81.25

Show/hide

Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH RSLFRGS++P Q+SVP+NG+    DNLRGRLAETESRLAQVRAREA LSR+LEEMKRLVSVMEIL+NYLKR+YRDRQEY VRLL+PLS K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK

XP_023544310.1 protein SKIP34 [Cucurbita pepo subsp. pepo]

1.20e-42

80.21

Show/hide

Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH RSLFRG+++P Q+SVP+NG+    DNLRGRLAETESRLAQVRAREA LSRLLEEMKRLV VMEILENYLKR+YRDRQEY VRLL+P+S K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIR5 Uncharacterized protein

1.00e-43

83.33

Show/hide

Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH R LFRGSL PYQ+SVP+NG     DNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK

A0A1S3B1B8 protein SKIP34

1.17e-42

82.29

Show/hide

Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH R LFRGS  PYQ+SVP+NG     DNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK

A0A5D3CN14 Protein SKIP34

1.17e-42

82.29

Show/hide

Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH R LFRGS  PYQ+SVP+NG     DNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEY VRLLSP+S K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK

A0A6J1BVG6 protein SKIP34

1.60e-55

100

Show/hide

Query:  MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK

A0A6J1IV54 protein SKIP34

1.00e-43

81.25

Show/hide

Query:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MCNGH RSLFRGS++P Q+SVP+NG+    DNLRGRLAETESRLAQVRAREA LSR+LEEMKRLVSVMEIL+NYLKR+YRDRQEY VRLL+PLS K
Subjt:  MCNGHQRSLFRGSLTPYQSSVPDNGE----DNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK

SwissProt top hits

e value

%identity

Alignment

Q8GWU7 Protein SKIP34

1.7e-15

52.13

Show/hide

Query:  MCNGHQRSLFRGSLTPYQS--SVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MC GH +SL   S    +S     D+  D+LR RLAETE+RL + RAREAELSR LE MKR VSVMEI+E +L+R+++++++   RL SP+S K
Subjt:  MCNGHQRSLFRGSLTPYQS--SVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK

Arabidopsis top hits

e value

%identity

Alignment

AT5G65495.1 unknown protein

1.2e-16

52.13

Show/hide

Query:  MCNGHQRSLFRGSLTPYQS--SVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK
        MC GH +SL   S    +S     D+  D+LR RLAETE+RL + RAREAELSR LE MKR VSVMEI+E +L+R+++++++   RL SP+S K
Subjt:  MCNGHQRSLFRGSLTPYQS--SVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTGTAACGGCCACCAGCGATCTTTGTTCAGAGGTAGCCTTACTCCCTACCAGAGCTCCGTTCCGGACAACGGTGAGGACAATCTACGGGGCCGACTAGCGGAAACCGA
GTCCCGCCTCGCTCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGACTCTTGGAGGAGATGAAGCGATTAGTCTCTGTTATGGAGATCCTCGAGAACTACCTCAAACGAC
AGTACCGCGACCGCCAAGAATATGCGGTTCGTCTCCTCTCTCCTCTATCTCCAAAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MCNGHQRSLFRGSLTPYQSSVPDNGEDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYAVRLLSPLSPK

MC01g1008 (gene) of Bitter gourd (Dali-11) v1 genome