; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC01g1025 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC01g1025
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionE3 ubiquitin-protein ligase ATL6-like
Genome locationMC01:15794239..15794622
RNA-Seq ExpressionMC01g1025
SyntenyMC01g1025
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN48724.1 hypothetical protein Csa_004396 [Cucumis sativus]7.91e-4157.14Show/hide
Query:  LSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTA-DGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKD------HMECAVCLAEFQHHET
        LSRP+ V +++L+ IFFI++F SVY+RH+LEL+A++ A + + + V+RFG  P  GL  A I  FP+V +   SA+K+       +ECAVCLAEFQH+ET
Subjt:  LSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTA-DGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKD------HMECAVCLAEFQHHET

Query:  LRLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL
        LRL+PKCGHVFHP CIDAWL  CATCP+CRA+L
Subjt:  LRLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL

RYR02271.1 hypothetical protein Ahy_B06g081084 isoform D [Arachis hypogaea]3.56e-3151.52Show/hide
Query:  SRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDH------MECAVCLAEFQHHETLR
        S  +A+++V+LV+  F+M F S+Y+RH  +  + T    T  G +R GA    GLDPAVI TFP++ Y   S VK H      +ECAVCL EF+  ETLR
Subjt:  SRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDH------MECAVCLAEFQHHETLR

Query:  LIPKCGHVFHPHCIDAWLGFCATCPLCRAELV
        LIPKC HVFHP CID WL    TCP+CRA LV
Subjt:  LIPKCGHVFHPHCIDAWLGFCATCPLCRAELV

RYR02272.1 hypothetical protein Ahy_B06g081084 isoform A [Arachis hypogaea]2.84e-3151.52Show/hide
Query:  SRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDH------MECAVCLAEFQHHETLR
        S  +A+++V+LV+  F+M F S+Y+RH  +  + T    T  G +R GA    GLDPAVI TFP++ Y   S VK H      +ECAVCL EF+  ETLR
Subjt:  SRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDH------MECAVCLAEFQHHETLR

Query:  LIPKCGHVFHPHCIDAWLGFCATCPLCRAELV
        LIPKC HVFHP CID WL    TCP+CRA LV
Subjt:  LIPKCGHVFHPHCIDAWLGFCATCPLCRAELV

XP_022133016.1 E3 ubiquitin-protein ligase ATL6-like [Momordica charantia]3.36e-87100Show/hide
Query:  ALSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDHMECAVCLAEFQHHETLRLIPK
        ALSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDHMECAVCLAEFQHHETLRLIPK
Subjt:  ALSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDHMECAVCLAEFQHHETLRLIPK

Query:  CGHVFHPHCIDAWLGFCATCPLCRAELV
        CGHVFHPHCIDAWLGFCATCPLCRAELV
Subjt:  CGHVFHPHCIDAWLGFCATCPLCRAELV

XP_022999119.1 E3 ubiquitin-protein ligase ATL6-like [Cucurbita maxima]2.86e-3153.03Show/hide
Query:  LSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDH------MECAVCLAEFQHHETL
        LS  +AV+IV+L++  F + F SVYLRH  +  +++   VTA   +R  A    GLDPAVI TFP ++Y   S VK+H      +ECAVCL EF+  ETL
Subjt:  LSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDH------MECAVCLAEFQHHETL

Query:  RLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL
        RLIPKC HVFHP CIDAWL    TCP+CRA L
Subjt:  RLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL

TrEMBL top hitse value%identityAlignment
A0A0A0KIT7 RING-type domain-containing protein3.83e-4157.14Show/hide
Query:  LSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTA-DGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKD------HMECAVCLAEFQHHET
        LSRP+ V +++L+ IFFI++F SVY+RH+LEL+A++ A + + + V+RFG  P  GL  A I  FP+V +   SA+K+       +ECAVCLAEFQH+ET
Subjt:  LSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTA-DGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKD------HMECAVCLAEFQHHET

Query:  LRLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL
        LRL+PKCGHVFHP CIDAWL  CATCP+CRA+L
Subjt:  LRLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL

A0A444YK30 RING-type domain-containing protein1.72e-3151.52Show/hide
Query:  SRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDH------MECAVCLAEFQHHETLR
        S  +A+++V+LV+  F+M F S+Y+RH  +  + T    T  G +R GA    GLDPAVI TFP++ Y   S VK H      +ECAVCL EF+  ETLR
Subjt:  SRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDH------MECAVCLAEFQHHETLR

Query:  LIPKCGHVFHPHCIDAWLGFCATCPLCRAELV
        LIPKC HVFHP CID WL    TCP+CRA LV
Subjt:  LIPKCGHVFHPHCIDAWLGFCATCPLCRAELV

A0A444YK34 RING-type domain-containing protein1.38e-3151.52Show/hide
Query:  SRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDH------MECAVCLAEFQHHETLR
        S  +A+++V+LV+  F+M F S+Y+RH  +  + T    T  G +R GA    GLDPAVI TFP++ Y   S VK H      +ECAVCL EF+  ETLR
Subjt:  SRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDH------MECAVCLAEFQHHETLR

Query:  LIPKCGHVFHPHCIDAWLGFCATCPLCRAELV
        LIPKC HVFHP CID WL    TCP+CRA LV
Subjt:  LIPKCGHVFHPHCIDAWLGFCATCPLCRAELV

A0A6J1BTV2 E3 ubiquitin-protein ligase ATL6-like1.63e-87100Show/hide
Query:  ALSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDHMECAVCLAEFQHHETLRLIPK
        ALSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDHMECAVCLAEFQHHETLRLIPK
Subjt:  ALSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDHMECAVCLAEFQHHETLRLIPK

Query:  CGHVFHPHCIDAWLGFCATCPLCRAELV
        CGHVFHPHCIDAWLGFCATCPLCRAELV
Subjt:  CGHVFHPHCIDAWLGFCATCPLCRAELV

A0A6J1KG60 E3 ubiquitin-protein ligase ATL6-like1.38e-3153.03Show/hide
Query:  LSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDH------MECAVCLAEFQHHETL
        LS  +AV+IV+L++  F + F SVYLRH  +  +++   VTA   +R  A    GLDPAVI TFP ++Y   S VK+H      +ECAVCL EF+  ETL
Subjt:  LSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDH------MECAVCLAEFQHHETL

Query:  RLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL
        RLIPKC HVFHP CIDAWL    TCP+CRA L
Subjt:  RLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL

SwissProt top hitse value%identityAlignment
O64763 E3 ubiquitin-protein ligase ATL93.2e-2045.86Show/hide
Query:  PVAVLIVVLVSIFFIMVFLSVYLRH------YLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAV---KDHMECAVCLAEFQHHETL
        PV V+I VL  + F MVF S++ R          +  ST A   +  V R   L   GLD   I TFP  +Y    AV   K  +ECAVCL EF+  ETL
Subjt:  PVAVLIVVLVSIFFIMVFLSVYLRH------YLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAV---KDHMECAVCLAEFQHHETL

Query:  RLIPKCGHVFHPHCIDAWLGFCATCPLCRAELV
        RL+P C HVFH  C+D WL   +TCPLCRA+LV
Subjt:  RLIPKCGHVFHPHCIDAWLGFCATCPLCRAELV

Q84W40 RING-H2 finger protein ATL119.0e-2347.66Show/hide
Query:  VAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGA--LPMCGLDPAVIRTFPVVVYHSDSAV---KDHMECAVCLAEFQHHETLRLIPK
        +A+L++VLVS+FF + F SVY+R  LE           D  N          GLD ++I TFP   Y +   +   K+ +EC+VCL EF+  ETLRLIPK
Subjt:  VAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGA--LPMCGLDPAVIRTFPVVVYHSDSAV---KDHMECAVCLAEFQHHETLRLIPK

Query:  CGHVFHPHCIDAWLGFCATCPLCRAELV
        C HVFHP CIDAWL    TCPLCRA+L+
Subjt:  CGHVFHPHCIDAWLGFCATCPLCRAELV

Q8LGA5 E3 ubiquitin-protein ligase ATL311.3e-2145.45Show/hide
Query:  ALSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNR--FGALPMCGLDPAVIRTFPVVVY---HSDSAVKDHMECAVCLAEFQHHETL
        +LS  +AV++VV+++  F M F +VY+RH     A   +   A G  R    A    GLD   I TFP  VY    +    K  +ECA+CL EF+  ETL
Subjt:  ALSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNR--FGALPMCGLDPAVIRTFPVVVY---HSDSAVKDHMECAVCLAEFQHHETL

Query:  RLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL
        RL+PKC HVFHPHCI AWL    TCP+CR  L
Subjt:  RLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL

Q8RXX9 E3 ubiquitin-protein ligase ATL64.0e-2344.93Show/hide
Query:  LSRPVAVLIVVLVSIFFIMVFLSVYLRHYLEL---------HASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVY---HSDSAVKDHMECAVCLAEF
        LS  +AV++V+L++  F M F S+Y RH   +          A +RATV A            GLD +V+ TFP  +Y    +    K  +ECA+CL EF
Subjt:  LSRPVAVLIVVLVSIFFIMVFLSVYLRHYLEL---------HASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVY---HSDSAVKDHMECAVCLAEF

Query:  QHHETLRLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL
        +  ETLRL+PKC HVFHPHCIDAWL    TCP+CRA L
Subjt:  QHHETLRLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL

Q9SK92 E3 ubiquitin-protein ligase ATL154.9e-2147.76Show/hide
Query:  ALSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADG--VN-RFGALPMCGLDPAVIRTFPVVVYHSDSAV---KDHMECAVCLAEFQHHET
        + S   A++++VLVS+FF +  +SVY+R  L+ HA    +    G  +N R    P  GLD +VI TFP   Y +   +   K+ +EC VCL EF+  ET
Subjt:  ALSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADG--VN-RFGALPMCGLDPAVIRTFPVVVYHSDSAV---KDHMECAVCLAEFQHHET

Query:  LRLIPKCGHVFHPHCIDAWLGFCATCPLCRAELV
        LRLIP+C HVFHP CIDAWL    TCPLCRA LV
Subjt:  LRLIPKCGHVFHPHCIDAWLGFCATCPLCRAELV

Arabidopsis top hitse value%identityAlignment
AT1G22500.1 RING/U-box superfamily protein3.5e-2247.76Show/hide
Query:  ALSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADG--VN-RFGALPMCGLDPAVIRTFPVVVYHSDSAV---KDHMECAVCLAEFQHHET
        + S   A++++VLVS+FF +  +SVY+R  L+ HA    +    G  +N R    P  GLD +VI TFP   Y +   +   K+ +EC VCL EF+  ET
Subjt:  ALSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADG--VN-RFGALPMCGLDPAVIRTFPVVVYHSDSAV---KDHMECAVCLAEFQHHET

Query:  LRLIPKCGHVFHPHCIDAWLGFCATCPLCRAELV
        LRLIP+C HVFHP CIDAWL    TCPLCRA LV
Subjt:  LRLIPKCGHVFHPHCIDAWLGFCATCPLCRAELV

AT1G72200.1 RING/U-box superfamily protein6.4e-2447.66Show/hide
Query:  VAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGA--LPMCGLDPAVIRTFPVVVYHSDSAV---KDHMECAVCLAEFQHHETLRLIPK
        +A+L++VLVS+FF + F SVY+R  LE           D  N          GLD ++I TFP   Y +   +   K+ +EC+VCL EF+  ETLRLIPK
Subjt:  VAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGA--LPMCGLDPAVIRTFPVVVYHSDSAV---KDHMECAVCLAEFQHHETLRLIPK

Query:  CGHVFHPHCIDAWLGFCATCPLCRAELV
        C HVFHP CIDAWL    TCPLCRA+L+
Subjt:  CGHVFHPHCIDAWLGFCATCPLCRAELV

AT2G35000.1 RING/U-box superfamily protein2.3e-2145.86Show/hide
Query:  PVAVLIVVLVSIFFIMVFLSVYLRH------YLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAV---KDHMECAVCLAEFQHHETL
        PV V+I VL  + F MVF S++ R          +  ST A   +  V R   L   GLD   I TFP  +Y    AV   K  +ECAVCL EF+  ETL
Subjt:  PVAVLIVVLVSIFFIMVFLSVYLRH------YLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAV---KDHMECAVCLAEFQHHETL

Query:  RLIPKCGHVFHPHCIDAWLGFCATCPLCRAELV
        RL+P C HVFH  C+D WL   +TCPLCRA+LV
Subjt:  RLIPKCGHVFHPHCIDAWLGFCATCPLCRAELV

AT3G05200.1 RING/U-box superfamily protein2.9e-2444.93Show/hide
Query:  LSRPVAVLIVVLVSIFFIMVFLSVYLRHYLEL---------HASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVY---HSDSAVKDHMECAVCLAEF
        LS  +AV++V+L++  F M F S+Y RH   +          A +RATV A            GLD +V+ TFP  +Y    +    K  +ECA+CL EF
Subjt:  LSRPVAVLIVVLVSIFFIMVFLSVYLRHYLEL---------HASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVY---HSDSAVKDHMECAVCLAEF

Query:  QHHETLRLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL
        +  ETLRL+PKC HVFHPHCIDAWL    TCP+CRA L
Subjt:  QHHETLRLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL

AT5G27420.1 carbon/nitrogen insensitive 19.2e-2345.45Show/hide
Query:  ALSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNR--FGALPMCGLDPAVIRTFPVVVY---HSDSAVKDHMECAVCLAEFQHHETL
        +LS  +AV++VV+++  F M F +VY+RH     A   +   A G  R    A    GLD   I TFP  VY    +    K  +ECA+CL EF+  ETL
Subjt:  ALSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNR--FGALPMCGLDPAVIRTFPVVVY---HSDSAVKDHMECAVCLAEFQHHETL

Query:  RLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL
        RL+PKC HVFHPHCI AWL    TCP+CR  L
Subjt:  RLIPKCGHVFHPHCIDAWLGFCATCPLCRAEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCATTGAGCCGCCCCGTAGCGGTGCTCATTGTGGTGCTTGTTTCTATTTTCTTCATCATGGTGTTTCTCTCCGTCTATCTCCGCCATTACCTGGAGTTACACGCCTCTAC
TCGGGCCACCGTCACCGCTGACGGCGTCAACCGCTTTGGAGCGTTACCAATGTGCGGTCTGGACCCGGCCGTCATTCGGACGTTTCCTGTGGTCGTCTACCACTCCGACT
CCGCCGTCAAGGACCACATGGAATGCGCGGTCTGCCTCGCCGAATTCCAACACCACGAAACGCTGCGTTTGATTCCCAAATGCGGTCACGTTTTCCACCCTCATTGCATC
GACGCCTGGCTGGGCTTCTGCGCCACGTGTCCTCTATGCAGAGCCGAGCTTGTC
mRNA sequenceShow/hide mRNA sequence
GCATTGAGCCGCCCCGTAGCGGTGCTCATTGTGGTGCTTGTTTCTATTTTCTTCATCATGGTGTTTCTCTCCGTCTATCTCCGCCATTACCTGGAGTTACACGCCTCTAC
TCGGGCCACCGTCACCGCTGACGGCGTCAACCGCTTTGGAGCGTTACCAATGTGCGGTCTGGACCCGGCCGTCATTCGGACGTTTCCTGTGGTCGTCTACCACTCCGACT
CCGCCGTCAAGGACCACATGGAATGCGCGGTCTGCCTCGCCGAATTCCAACACCACGAAACGCTGCGTTTGATTCCCAAATGCGGTCACGTTTTCCACCCTCATTGCATC
GACGCCTGGCTGGGCTTCTGCGCCACGTGTCCTCTATGCAGAGCCGAGCTTGTC
Protein sequenceShow/hide protein sequence
ALSRPVAVLIVVLVSIFFIMVFLSVYLRHYLELHASTRATVTADGVNRFGALPMCGLDPAVIRTFPVVVYHSDSAVKDHMECAVCLAEFQHHETLRLIPKCGHVFHPHCI
DAWLGFCATCPLCRAELV