CuGenDBv2

Gene ID	MC01g1155
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	30S ribosomal protein S3, chloroplastic
Genome location	MC01:16881488..16881622
RNA-Seq Expression	MC01g1155
Synteny	MC01g1155
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR009019 - K homology domain superfamily, prokaryotic type IPR015946 - K homology domain-like, alpha/beta

Homology

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GenBank top hits

e value

%identity

Alignment

QJD26682.1 ribosomal protein S3 [Trichosanthes rosthornii]

6.56e-19

97.78

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        MRIFSGVEGIARIEIKKRIDLIQVIIFM FPKLLIEGGSRKIEEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

YP_009456099.1 ribosomal protein S3 [Momordica charantia]

1.66e-19

100

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

YP_009525224.1 ribosomal protein S3 [Hodgsonia macrocarpa]

2.53e-18

95.56

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        MRIFSGVEGIARIEI+KRIDLIQVIIFM FPKLLIEGGSRKIEEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

YP_009751691.1 ribosomal protein S3 [Hodgsonia heteroclita]

2.53e-18

95.56

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        MRIFSGVEGIARIEI+KRIDLIQVIIFM FPKLLIEGGSRKIEEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

YP_009752196.1 ribosomal protein S3 [Linnaeosicyos amara]

2.48e-18

95.56

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        MRIFSGVEGIARIEI+KRIDLIQVIIFM FPKLLIEGGSRKIEEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

TrEMBL top hits

e value

%identity

Alignment

A0A2I6C046 30S ribosomal protein S3, chloroplastic

8.06e-20

100

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

A0A346QNI1 30S ribosomal protein S3, chloroplastic

1.23e-18

95.56

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        MRIFSGVEGIARIEI+KRIDLIQVIIFM FPKLLIEGGSRKIEEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

A0A6H0ERW4 30S ribosomal protein S3, chloroplastic

1.23e-18

95.56

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        MRIFSGVEGIARIEI+KRIDLIQVIIFM FPKLLIEGGSRKIEEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

A0A6H0EW62 30S ribosomal protein S3, chloroplastic

1.20e-18

95.56

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        MRIFSGVEGIARIEI+KRIDLIQVIIFM FPKLLIEGGSRKIEEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

A0A6M3RX53 30S ribosomal protein S3, chloroplastic

3.17e-19

97.78

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        MRIFSGVEGIARIEIKKRIDLIQVIIFM FPKLLIEGGSRKIEEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

SwissProt top hits

e value

%identity

Alignment

Q09FS2 30S ribosomal protein S3, chloroplastic

3.9e-13

86.67

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        MRI SGVEGIARIEI+KRIDLIQVII+M FPKLLIEG SR IEEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

Q0ZIY0 30S ribosomal protein S3, chloroplastic

1.9e-12

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        +RI SGVEGIARIEI+KRIDLIQVII+M FPKLL+EG  R+IEEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

Q33BZ3 30S ribosomal protein S3, chloroplastic

4.3e-12

84.44

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        MR  SGVEGIARIEIKKRIDLIQVIIFM FPKLLIE   R IEEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

Q49KW0 30S ribosomal protein S3, chloroplastic

3.9e-13

82.22

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        MRI SGVEGIARIEI+KRIDLIQVII+M FPKLL+EG +R+IEEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

Q4VZN0 30S ribosomal protein S3, chloroplastic

1.2e-14

88.89

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        MRIFSGVEGIARIEI+KRIDLIQVIIFM FPKL+I+ GSRKIEEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00800.1 structural constituent of ribosome

2.6e-12

73.33

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Query:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL
        +RI SG+EGIARIEI+KRIDLIQ+II+M FPKLLIE   R++EEL
Subjt:  MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

Sequences

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CDS sequence

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ATGAGAATATTCTCTGGTGTTGAGGGAATTGCACGTATCGAAATTAAAAAAAGAATTGATCTTATCCAAGTGATAATCTTTATGGCATTCCCAAAGTTATTAATAGAAGG
TGGGTCTCGAAAAATCGAAGAATTG

mRNA sequence

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ATGAGAATATTCTCTGGTGTTGAGGGAATTGCACGTATCGAAATTAAAAAAAGAATTGATCTTATCCAAGTGATAATCTTTATGGCATTCCCAAAGTTATTAATAGAAGG
TGGGTCTCGAAAAATCGAAGAATTG

Protein sequence

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MRIFSGVEGIARIEIKKRIDLIQVIIFMAFPKLLIEGGSRKIEEL

MC01g1155 (gene) of Bitter gourd (Dali-11) v1 genome