CuGenDBv2

Gene ID	MC01g1304
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	chaperonin-like RBCX protein 1, chloroplastic
Genome location	MC01:17869188..17870510
RNA-Seq Expression	MC01g1304
Synteny	MC01g1304
Gene Ontology terms	GO:0006270 - DNA replication initiation (biological process) GO:0009409 - response to cold (biological process) GO:0009414 - response to water deprivation (biological process) GO:0009651 - response to salt stress (biological process) GO:0015977 - carbon fixation (biological process) GO:0015979 - photosynthesis (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0033314 - mitotic DNA replication checkpoint (biological process) GO:0061077 - chaperone-mediated protein folding (biological process) GO:0005664 - nuclear origin of replication recognition complex (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0044183 - protein folding chaperone (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0003688 - DNA replication origin binding (molecular function)
InterPro domains	IPR038052 - Chaperonin-like RbcX superfamily IPR003435 - Chaperonin-like RbcX

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022132911.1 chaperonin-like RBCX protein 1, chloroplastic [Momordica charantia]

6.09e-120

100

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
        RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK

XP_022926897.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita moschata]

6.00e-99

87.06

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MES AR+LSPT FPSLFP PNLNRS   P+WP K +ASK   L+L CHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIV AQLESYNPEAH ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP
        RHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKM  ESNTRLMREYVTETSP
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP

XP_023003335.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima]

4.41e-101

88.24

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MES AR+LSPT FPSLFPLPNLNRS   P+WP KP+ASK   L+L CHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIV AQLESYNPEAH ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP
        RHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKM  ESNTRLMREYVTETSP
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP

XP_023518339.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita pepo subsp. pepo]

7.31e-100

87.06

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MES AR+LSPT FPS+FPLPNLNR    P+WP KP+ASK   L+L CHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIV AQLESYNPEAH ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP
        RHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKM  ESNTRLMREYVTETSP
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP

XP_038881664.1 chaperonin-like RBCX protein 1, chloroplastic isoform X1 [Benincasa hispida]

3.91e-102

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        ME SAR+LS TQFPSLFPLPNLNRS VFP+WP KPKA+K  RL   C KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIV AQLESYNPEA+ ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
        RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KM SESNTRLMREYVTETSPS+TEK
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B054 uncharacterized protein LOC103484635

3.01e-99

85.14

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MESSAR+LSPTQFPS+F LPNLNR  VFP+ P KP+ASK  RL   C KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIV AQLESYNPEA++ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
        RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KM  ESNTR+MREY+TETSPS+TEK
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK

A0A5D3CNU4 Chaperonin-like RBCX protein 1

3.01e-99

85.14

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MESSAR+LSPTQFPS+F LPNLNR  VFP+ P KP+ASK  RL   C KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIV AQLESYNPEA++ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
        RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLA KM  ESNTR+MREY+TETSPS+TEK
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK

A0A6J1BTL5 chaperonin-like RBCX protein 1, chloroplastic

2.95e-120

100

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
        RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK

A0A6J1EFL9 chaperonin-like RBCX protein 1, chloroplastic

2.91e-99

87.06

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MES AR+LSPT FPSLFP PNLNRS   P+WP K +ASK   L+L CHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIV AQLESYNPEAH ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP
        RHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKM  ESNTRLMREYVTETSP
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP

A0A6J1KRH1 chaperonin-like RBCX protein 1, chloroplastic

2.14e-101

88.24

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MES AR+LSPT FPSLFPLPNLNRS   P+WP KP+ASK   L+L CHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIV AQLESYNPEAH ELMEFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP
        RHSLNDGDKFL++LMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKM  ESNTRLMREYVTETSP
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSP

SwissProt top hits

e value

%identity

Alignment

Q44177 RuBisCO chaperone RbcX

4.0e-05

30.7

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Query:  KAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEW-DNLKRLASKMASESNTRLM
        + A  L ++ TY AVR++  QL   NP   + L EF  RH + + D +L ++M E   +K L LRIL VR    +   E+   +     K ++ ++ R +
Subjt:  KAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEW-DNLKRLASKMASESNTRLM

Query:  REYVTETSPSETEK
         E +T+   S T++
Subjt:  REYVTETSPSETEK

Q8DIS6 RuBisCO chaperone RbcX

2.0e-04

38.57

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Query:  KAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVR
        +  K L ++ TY AVR VI QL   +P   + L +F  + S+ DG+++L +L RE      L  RIL VR
Subjt:  KAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVR

Q94AU9 Chaperonin-like RBCX protein 1, chloroplastic

5.6e-52

63.79

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Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MESS+ +L  +    L P       R    +P    + K  + ++  +KMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV AQLESYNPEA++EL EFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETE
         +S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLA K   +SNTRLMREYV ETS  ET+
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETE

Arabidopsis top hits

e value

%identity

Alignment

AT4G04330.1 Chaperonin-like RbcX protein

4.0e-53

63.79

Show/hide

Query:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD
        MESS+ +L  +    L P       R    +P    + K  + ++  +KMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV AQLESYNPEA++EL EFLD
Subjt:  MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLD

Query:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETE
         +S++DGDKF A+LMR SSRH +LALRILEVRSAYCKNDFEWDN+KRLA K   +SNTRLMREYV ETS  ET+
Subjt:  RHSLNDGDKFLASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETE

AT5G19855.1 Chaperonin-like RbcX protein

5.9e-04

34.62

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Query:  KNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVR-SAYCKNDFEWDNLKRLASKMASESNTRLMREY
        K + N+FTY AVR V+ QL   NP  +      +  +   DG +FL +L +ES   + LA R++  R   Y K   + D+ K    +  S+ N  LMRE 
Subjt:  KNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLDRHSLNDGDKFLASLMRESSRHKSLALRILEVR-SAYCKNDFEWDNLKRLASKMASESNTRLMREY

Query:  VTET
        + ET
Subjt:  VTET

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAATCGTCTGCAAGGGTTCTCTCCCCGACTCAATTTCCTTCTCTTTTTCCATTACCCAATTTAAATAGAAGCAGAGTTTTCCCACTCTGGCCAACGAAGCCGAAAGC
CTCTAAGTTTACTCGCTTACAGTTACAATGCCATAAGATGTATGTTCCCGGGTTTGGAGAAGCGTCACCAGAAGCGAAGGCGGCCAAAAATCTGCACAATTTCTTCACGT
ATGTTGCTGTTAGGATCGTAATTGCGCAGCTTGAGAGCTATAATCCAGAGGCACACGTGGAGTTAATGGAGTTTCTTGATAGACATTCACTGAATGATGGGGACAAGTTC
CTGGCCAGTTTGATGCGCGAATCGTCTAGGCATAAGAGTCTTGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTTGAGTGGGACAACCTCAAGCG
ATTAGCATCCAAAATGGCGAGTGAATCCAACACGAGATTGATGAGGGAATATGTGACAGAGACGAGTCCATCGGAAACTGAGAAG

mRNA sequence

Show/hide mRNA sequence

GTTTTATTACCACGCGAAAGGCGAAACATAATAACATATTTAATCAAGTTAGTGAAAATAGAAAACGATGTGTCGTTTGAGCATACTTGGTGAGAATTACACGTGTCGTA
GACACCACAAGGAGATTTTAACAGCCAAGATATTTCCAATTTTTACATGAAGGCATTAGAGTTAGAGGAAGAGCTCTCTTTCCCTGGTTTCAGTTTTCTTCTGAAGCAAT
TTGATAGAGCTTAAGATTATCCATGGAATCGTCTGCAAGGGTTCTCTCCCCGACTCAATTTCCTTCTCTTTTTCCATTACCCAATTTAAATAGAAGCAGAGTTTTCCCAC
TCTGGCCAACGAAGCCGAAAGCCTCTAAGTTTACTCGCTTACAGTTACAATGCCATAAGATGTATGTTCCCGGGTTTGGAGAAGCGTCACCAGAAGCGAAGGCGGCCAAA
AATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCGTAATTGCGCAGCTTGAGAGCTATAATCCAGAGGCACACGTGGAGTTAATGGAGTTTCTTGATAGACATTC
ACTGAATGATGGGGACAAGTTCCTGGCCAGTTTGATGCGCGAATCGTCTAGGCATAAGAGTCTTGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATT
TTGAGTGGGACAACCTCAAGCGATTAGCATCCAAAATGGCGAGTGAATCCAACACGAGATTGATGAGGGAATATGTGACAGAGACGAGTCCATCGGAAACTGAGAAG

Protein sequence

Show/hide protein sequence

MESSARVLSPTQFPSLFPLPNLNRSRVFPLWPTKPKASKFTRLQLQCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVIAQLESYNPEAHVELMEFLDRHSLNDGDKF
LASLMRESSRHKSLALRILEVRSAYCKNDFEWDNLKRLASKMASESNTRLMREYVTETSPSETEK

MC01g1304 (gene) of Bitter gourd (Dali-11) v1 genome