CuGenDBv2

Gene ID	MC01g1374
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	ribosomal RNA-processing protein 17-like
Genome location	MC01:18385088..18392759
RNA-Seq Expression	MC01g1374
Synteny	MC01g1374
Gene Ontology terms	GO:0005730 - nucleolus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019186 - Nucleolar protein 12

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7026594.1 hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.17e-94

81.31

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Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKN+ +EGG L QP  RHIKK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EKELVL+GG+LPADRPVDEQND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        D     E+EEE+P APISETTTYDSGNIKVTV TSEV RD EI PIDK Q +T+QL+AKDKKH+LP+TKKKPFKKVA++KSR K RSK DKKKGRKKK
Subjt:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

XP_008455785.1 PREDICTED: ribosomal RNA-processing protein 17 [Cucumis melo]

5.26e-96

82.99

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Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKNDG+EGGELAQP  RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVLYGG+LPADR VD+QND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        D E+EEE+P AP SE  TYD+GN+KVTV TSEVSR+GEI PIDK QTA  QL+ KDKKHNLPITKKK FKKVAKQ+SRPK RSKRDKKKGRKKK
Subjt:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

XP_022142095.1 ribosomal RNA-processing protein 17-like [Momordica charantia]

9.36e-122

100

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Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
Subjt:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]

2.85e-94

81.82

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Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKN+ +EGG L QP  RHIKK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EKELVL+GG+LPADRPVDEQND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        D     E+EEEKP APISETTTYDSGNIKVTV TSEV RD EI PIDK Q +T+QL+AKDKKH+LP+TKKKPFKKVA++KSR K RSK DKKKGRKKK
Subjt:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

XP_038881021.1 nucleolar protein 12 [Benincasa hispida]

2.50e-99

83.84

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Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MV+NDG+EG ELAQP  RHIKKRAL+NKAL+VSFNEKDLRD+VTGFHKRKKKRRKEA+KQQEEA RRKRIE RKKR+ EK+LVLYGG+LPADRPVDE+ND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  DHEE----EEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        DHEE    EEEKP AP SETTTYDSGNIKVTVITSEVSR+ EI PIDK QTATTQL AKDKKHNLP+TKKKPFKKVAKQ+SRPK RSKRDK+KG+KKK
Subjt:  DHEE----EEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYB4 Uncharacterized protein

3.52e-92

80.61

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Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKNDG+EGGELAQP  RHIKKRAL+NKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVL+GG+LPADR VD+QND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATT--QLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        D   EEE+P AP+SE TTYD+GN+KVTV TSEVSR+ EI PIDK QTAT   QL+ KDKKHNLPITKKK FKKVAKQ+ RPK RSKRDKKKGRKKK
Subjt:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATT--QLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

A0A1S3C1A3 ribosomal RNA-processing protein 17

2.55e-96

82.99

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Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKNDG+EGGELAQP  RHIKKRALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK EK+LVLYGG+LPADR VD+QND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        D E+EEE+P AP SE  TYD+GN+KVTV TSEVSR+GEI PIDK QTA  QL+ KDKKHNLPITKKK FKKVAKQ+SRPK RSKRDKKKGRKKK
Subjt:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

A0A6J1CL67 ribosomal RNA-processing protein 17-like

4.53e-122

100

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Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
Subjt:  DHEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

A0A6J1EG67 ribosomal RNA-processing protein 17

2.28e-93

81.31

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Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKN+ +EGG L QP  RHIKK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EK+LVL+GG+LPADRPVDEQND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        D     E+EEEKP APISETT YDSGNIKVTV TSEV RD EI PIDK Q +T+QL+AKDKKH+LPITKKKPFKKVA++KSR K RSK DKKKGRKKK
Subjt:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

A0A6J1KRQ7 ribosomal RNA-processing protein 17

1.32e-92

80.81

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Query:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND
        MVKN+  EGG L QP  RH+KK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EK+LVL+GG+LPADRPVDEQND
Subjt:  MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQND

Query:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK
        D     E+EEEKP APISETTTYDSGNIKVTV TSEV R+ EI PIDK Q +T+QL+AKDKKH+LPITKKKPFKKVA++KSR K RSK DKKKGRKKK
Subjt:  D----HEEEEEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

2.1e-31

53.48

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Query:  DEGGELAQP-RGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEE
        +E G LA P   RHI KRA KNK+L VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA RRKRIE RK RK E+ +V   G    D   +++  D E+E
Subjt:  DEGGELAQP-RGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEE

Query:  EEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDK---KHNLPITKKKPFKKVAKQKSRPKPRSKRDKKK
        E +P A  S TT YD+G +KVTV TSE+SR+ E  PI K +T +T+  +  K   K  +P+ K KP K+ ++++S  K   KRDKKK
Subjt:  EEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDK---KHNLPITKKKPFKKVAKQKSRPKPRSKRDKKK

Sequences

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CDS sequence

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ATGGTGAAGAACGACGGGGACGAAGGAGGTGAGCTCGCACAACCTCGTGGTCGCCACATAAAGAAGAGAGCTCTCAAGAACAAAGCTCTTGCAGTTTCTTTCAAT
GAGAAAGACTTGAGGGACTATGTAACTGGATTTCATAAGAGGAAGAAGAAGAGGAGAAAGGAAGCGGAGAAGCAGCAAGAGGAAGCGAAGCGGCGGAAGCGCATC
GAATTGCGCAAAAAGAGAAAAGAAGAAAAAGAGCTGGTGCTATATGGTGGTATTCTACCAGCTGATCGGCCGGTTGATGAGCAGAATGATGATCACGAGGAAGAG
GAAGAGAAGCCATTTGCCCCAATTTCTGAGACGACGACGTACGACAGTGGTAACATCAAAGTCACAGTGATAACAAGTGAGGTATCTCGTGACGGAGAAATCTGT
CCCATCGACAAGTCACAGACAGCAACAACCCAATTGGTTGCAAAGGATAAGAAGCACAATCTGCCAATTACCAAGAAGAAGCCATTCAAGAAAGTTGCAAAACAG
AAGTCGAGGCCGAAGCCCCGAAGTAAACGAGACAAAAAGAAAGGAAGAAAAAAGAAATAG

mRNA sequence

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ATAAAAATAAATAAATAAATGTGGACGAGTTTGTGTAATTTAATTTGGGCTGGGCCTAATTCATAGATGTGAAGCCCACCCACTGACCCAATCATCCGCCCCGTC
CCGCTAAATTGTGATTGTCCGCCGTCGAGCATGTGAAGCAGGGACGGTGCGATGGTGAAGAACGACGGGGACGAAGGAGGTGAGCTCGCACAACCTCGTGGTCGC
CACATAAAGAAGAGAGCTCTCAAGAACAAAGCTCTTGCAGTTTCTTTCAATGAGAAAGACTTGAGGGACTATGTAACTGGATTTCATAAGAGGAAGAAGAAGAGG
AGAAAGGAAGCGGAGAAGCAGCAAGAGGAAGCGAAGCGGCGGAAGCGCATCGAATTGCGCAAAAAGAGAAAAGAAGAAAAAGAGCTGGTGCTATATGGTGGTATT
CTACCAGCTGATCGGCCGGTTGATGAGCAGAATGATGATCACGAGGAAGAGGAAGAGAAGCCATTTGCCCCAATTTCTGAGACGACGACGTACGACAGTGGTAAC
ATCAAAGTCACAGTGATAACAAGTGAGGTATCTCGTGACGGAGAAATCTGTCCCATCGACAAGTCACAGACAGCAACAACCCAATTGGTTGCAAAGGATAAGAAG
CACAATCTGCCAATTACCAAGAAGAAGCCATTCAAGAAAGTTGCAAAACAGAAGTCGAGGCCGAAGCCCCGAAGTAAACGAGACAAAAAGAAAGGAAGAAAAAAG
AAATAGGTGTTTCCCCAACAGTGATTCAGATGCCTTCGTTCAGCTCATGAGTAGAACTTACTTCAGCAGTCAAGCAAAAATCCTTTGGTCCAACAGGGTGATAGC
CCTTTTATGGAGATTGCTTTGAAAGAAACAAAAAGAATATTCTGTTTCAATTTTTTTGTAATTATGATGTAACACAAATCTTCGCCAATTGCAATCCATTTGGTA
TGGACCATGTGGTTGAGATATACCATCTACCTTTTATGCACTCCCTCTTTTGATAAAGAAAACAATAAATATCTGCATCTTCAATGTCAAGATTAAATTTTTTTA
ATTTTT

Protein sequence

Show/hide protein sequence

MVKNDGDEGGELAQPRGRHIKKRALKNKALAVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIELRKKRKEEKELVLYGGILPADRPVDEQNDDHEEE
EEKPFAPISETTTYDSGNIKVTVITSEVSRDGEICPIDKSQTATTQLVAKDKKHNLPITKKKPFKKVAKQKSRPKPRSKRDKKKGRKKK

MC01g1374 (gene) of Bitter gourd (Dali-11) v1 genome