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MC01g1498 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC01g1498
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionSplicing factor subunit
Genome locationMC01:19350915..19351217
RNA-Seq ExpressionMC01g1498
SyntenyMC01g1498
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
InterPro domainsIPR009846 - Splicing factor 3B subunit 5/RDS3 complex subunit 10
IPR017089 - Splicing factor 3B, subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RWR96626.1 Splicing factor 3B subunit 5/RDS3 complex subunit 10 [Cinnamomum micranthum f. kanehirae]1.19e-4498.61Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAI+ENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

XP_015887858.1 uncharacterized protein At4g14342 [Ziziphus jujuba]1.19e-4498.61Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAI+ENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

XP_022142036.1 uncharacterized protein At4g14342-like isoform X1 [Momordica charantia]4.14e-45100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

XP_038892845.1 uncharacterized protein At4g14342 isoform X2 [Benincasa hispida]8.60e-4598.61Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAI+ENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

XP_042510368.1 uncharacterized protein At4g14342 isoform X1 [Macadamia integrifolia]1.19e-4498.61Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAI+ENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

TrEMBL top hitse value%identityAlignment
A0A218VSR0 Splicing factor subunit5.75e-4598.61Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAI+ENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

A0A6J1CM89 Splicing factor subunit2.00e-45100Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

A0A6J1EJ56 Splicing factor subunit5.75e-4598.61Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAI+ENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

A0A6J1IBJ4 Splicing factor subunit5.75e-4598.61Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAI+ENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

A0A6P4A3S7 Splicing factor subunit5.75e-4598.61Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAI+ENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

SwissProt top hitse value%identityAlignment
P58728 Uncharacterized protein At4g143429.8e-3593.06Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAI+ENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

Q56K13 Splicing factor 3B subunit 56.2e-2162.32Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAI+ENES  R R+N M+
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

Q9BWJ5 Splicing factor 3B subunit 56.2e-2162.32Show/hide
Query:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAI+ENES  R R+N M+
Subjt:  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

Q9LW64 Uncharacterized protein At3g233252.9e-3491.67Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAI+ENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

Q9VHI4 Splicing factor 3B subunit 52.1e-2166.18Show/hide
Query:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAI+ENES  R R+N M+
Subjt:  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

Arabidopsis top hitse value%identityAlignment
AT3G23325.1 Splicing factor 3B subunit 5/RDS3 complex subunit 102.0e-3591.67Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAI+ENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ

AT4G14342.1 Splicing factor 3B subunit 5/RDS3 complex subunit 107.0e-3693.06Show/hide
Query:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ
        MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAI+ENESIGRERYNFMQ
Subjt:  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACTGGGCATGCTGACTTAAATAGATTTGAATGGGCCGTCAATAT
TCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATCCTAGCATACTTTGCTATATCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTTATGCAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACTGGGCATGCTGACTTAAATAGATTTGAATGGGCCGTCAATAT
TCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATCCTAGCATACTTTGCTATATCAGAAAATGAATCTATTGGGAGGGAACGCTACAACTTTATGCAG
Protein sequenceShow/hide protein sequence
MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAISENESIGRERYNFMQ