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MC01g1560 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC01g1560
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description40S ribosomal protein S24
Genome locationMC01:19781204..19781462
RNA-Seq ExpressionMC01g1560
SyntenyMC01g1560
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001976 - Ribosomal protein S24e


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EPS57470.1 hypothetical protein M569_17346 [Genlisea aurea]1.91e-1962.79Show/hide
Query:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK
        PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQLKERKNRA KI G+++ +      A KKK
Subjt:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK

EPS72548.1 hypothetical protein M569_02208, partial [Genlisea aurea]1.01e-1962.79Show/hide
Query:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK
        PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQLKERKNRA KI G+++ +      A KKK
Subjt:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK

KAF7142846.1 hypothetical protein RHSIM_Rhsim05G0160100 [Rhododendron simsii]7.68e-1961.63Show/hide
Query:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK
        PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQ+KERKNRA KI G+++ +      A KKK
Subjt:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK

KAG5549426.1 hypothetical protein RHGRI_014687 [Rhododendron griersonianum]7.68e-1961.63Show/hide
Query:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK
        PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQ+KERKNRA KI G+++ +      A KKK
Subjt:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK

XP_015875449.1 40S ribosomal protein S24-1 [Ziziphus jujuba]7.68e-1961.63Show/hide
Query:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK
        PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQLKERKNRA KI G+++ +        KKK
Subjt:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK

TrEMBL top hitse value%identityAlignment
A0A2P2KRF0 40S ribosomal protein S242.96e-1961.63Show/hide
Query:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK
        PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQLKERKNRA K+ G+++ +      A KKK
Subjt:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK

A0A6I9QUI8 40S ribosomal protein S245.26e-1960.47Show/hide
Query:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK
        PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQ+KERKNRA K+ G+++ +      A KKK
Subjt:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK

A0A6P3ZCU6 40S ribosomal protein S243.72e-1961.63Show/hide
Query:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK
        PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQLKERKNRA KI G+++ +        KKK
Subjt:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK

S8BSC9 40S ribosomal protein S249.23e-2062.79Show/hide
Query:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK
        PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQLKERKNRA KI G+++ +      A KKK
Subjt:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK

S8E9K2 40S ribosomal protein S24 (Fragment)4.89e-2062.79Show/hide
Query:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK
        PN IFVFK  THFG  KS GF LIY D +ENA KY  KY LI RN LATKV K RKQLKERKNRA KI G+++ +      A KKK
Subjt:  PNVIFVFKILTHFGQAKS-GFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK

SwissProt top hitse value%identityAlignment
P62847 40S ribosomal protein S244.3e-0548.57Show/hide
Query:  PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICG
        P+VIFVF   THFG  K +GF +IY D ++ A K   K+ L  R+ L  K    RKQ KERKNR  K+ G
Subjt:  PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICG

Q4R5H5 40S ribosomal protein S244.3e-0548.57Show/hide
Query:  PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICG
        P+VIFVF   THFG  K +GF +IY D ++ A K   K+ L  R+ L  K    RKQ KERKNR  K+ G
Subjt:  PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICG

Q56JU9 40S ribosomal protein S244.3e-0548.57Show/hide
Query:  PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICG
        P+VIFVF   THFG  K +GF +IY D ++ A K   K+ L  R+ L  K    RKQ KERKNR  K+ G
Subjt:  PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICG

Q8LC83 40S ribosomal protein S24-24.3e-1358.67Show/hide
Query:  PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPR
        PN IF FK  THFG  K SG+ LIY D +ENA K+  KY L IRN L TK+ K RKQ+KERKNRA KI G+++ +
Subjt:  PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPR

Q9SS17 40S ribosomal protein S24-11.9e-1360Show/hide
Query:  PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPR
        PN IFVFK  THFG  K SGF LIY D +E+A K+  KY L IRN L TK+ K RKQ+KERKNRA KI G+++ +
Subjt:  PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPR

Arabidopsis top hitse value%identityAlignment
AT3G04920.1 Ribosomal protein S24e family protein1.4e-1460Show/hide
Query:  PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPR
        PN IFVFK  THFG  K SGF LIY D +E+A K+  KY L IRN L TK+ K RKQ+KERKNRA KI G+++ +
Subjt:  PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPR

AT5G28060.1 Ribosomal protein S24e family protein3.0e-1458.67Show/hide
Query:  PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPR
        PN IF FK  THFG  K SG+ LIY D +ENA K+  KY L IRN L TK+ K RKQ+KERKNRA KI G+++ +
Subjt:  PNVIFVFKILTHFGQAK-SGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCAAATGTGATCTTTGTTTTCAAGATTCTGACTCACTTCGGTCAGGCAAAATCTGGGTTTGACTTGATATATGGTGATTACATTGAGAATGCAATGAAGTACAGACTCAA
ATACATGCTAATAATCAGGAATGAACTTGCCACTAAGGTAGGAAAACCAAGAAAGCAGTTGAAGGAAAGAAAGAACAGGGCCAGCAAAATCTGTGGAATTGAAAGACCAA
GGCAACAGATTCTTACCAATGCAATGAAGAAGAAG
mRNA sequenceShow/hide mRNA sequence
CCAAATGTGATCTTTGTTTTCAAGATTCTGACTCACTTCGGTCAGGCAAAATCTGGGTTTGACTTGATATATGGTGATTACATTGAGAATGCAATGAAGTACAGACTCAA
ATACATGCTAATAATCAGGAATGAACTTGCCACTAAGGTAGGAAAACCAAGAAAGCAGTTGAAGGAAAGAAAGAACAGGGCCAGCAAAATCTGTGGAATTGAAAGACCAA
GGCAACAGATTCTTACCAATGCAATGAAGAAGAAG
Protein sequenceShow/hide protein sequence
PNVIFVFKILTHFGQAKSGFDLIYGDYIENAMKYRLKYMLIIRNELATKVGKPRKQLKERKNRASKICGIERPRQQILTNAMKKK