CuGenDBv2

Gene ID	MC01g1587
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	30S ribosomal protein S11, chloroplastic
Genome location	MC01:20041955..20042086
RNA-Seq Expression	MC01g1587
Synteny	MC01g1587
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001971 - Ribosomal protein S11 IPR036967 - Ribosomal protein S11 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AGW04472.1 ribosomal protein S11 [Astephanus triflorus]

4.01e-14

79.55

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGFKGTRRGT FAAQ A RNAIR VV QG+ QAEVM+K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

ATL22086.1 ribosomal protein S11 [Cassytha capillaris]

9.43e-14

77.27

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGF+GTRRGT FAAQ A RNAIR VV QG+ QAEVM+K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

TYJ37027.1 hypothetical protein E1A91_A05G348000v1 [Gossypium mustelinum]

3.03e-14

79.55

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGFKGTRRGT FAAQ ATRNAIR VV QG+ +AEVM+K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

YP_008965565.1 ribosomal protein S11 [Conopholis americana]

9.98e-15

77.27

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGFKGTRRGTSFAAQIA +NA+R VV QG+ +AEVM+K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

YP_009432840.1 ribosomal protein S11 [Cassytha filiformis]

9.43e-14

77.27

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGF+GTRRGT FAAQ A RNAIR VV QG+ QAEVM+K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

TrEMBL top hits

e value

%identity

Alignment

A0A291PSK8 30S ribosomal protein S11, chloroplastic

4.57e-14

77.27

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGF+GTRRGT FAAQ A RNAIR VV QG+ QAEVM+K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

A0A291PSP0 30S ribosomal protein S11, chloroplastic

4.57e-14

77.27

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGF+GTRRGT FAAQ A RNAIR VV QG+ QAEVM+K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

A0A5D2ZDD3 Uncharacterized protein

1.47e-14

79.55

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGFKGTRRGT FAAQ ATRNAIR VV QG+ +AEVM+K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

U3MBC6 Ribosomal protein S11

1.94e-14

79.55

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGFKGTRRGT FAAQ A RNAIR VV QG+ QAEVM+K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

V6AQI7 Ribosomal protein S11

4.83e-15

77.27

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGFKGTRRGTSFAAQIA +NA+R VV QG+ +AEVM+K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

SwissProt top hits

e value

%identity

Alignment

A0ZZ68 30S ribosomal protein S11, chloroplastic

6.0e-11

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGFKGTRRGT FAAQ A  NAIR VV QG+ +AEVM+K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

Q0G9S9 30S ribosomal protein S11, chloroplastic

6.0e-11

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGFKGTRRGT FAAQ A  NAIR VV QG+ +AEVM+K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

Q2L937 30S ribosomal protein S11, chloroplastic

6.0e-11

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGFKGTRRGT FAAQ A  NAIR VV QG+ +AEVM+K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

Q3V501 30S ribosomal protein S11, chloroplastic

6.0e-11

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGFKGTRRGT FAAQ A  NAIR VV QG+ +AEVM+K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

Q6EW19 30S ribosomal protein S11, chloroplastic

6.0e-11

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGFKGTRRGT FAAQ A  NAIR VV QG+ +AEVM+K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00750.1 ribosomal protein S11

4.7e-11

70.45

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Query:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK
        WSS GTCGF+GTRRGT FAAQ A  NAIR VV QG+ +AEV +K
Subjt:  WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

Sequences

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CDS sequence

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TGGTCATCCGTCGGTACTTGTGGATTTAAAGGTACGAGAAGAGGGACATCATTTGCTGCTCAAATCGCAACAAGAAACGCTATTCGAGTTGTAGTGAGTCAGGGTATACT
ACAAGCAGAAGTCATGGTAAAA

mRNA sequence

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TGGTCATCCGTCGGTACTTGTGGATTTAAAGGTACGAGAAGAGGGACATCATTTGCTGCTCAAATCGCAACAAGAAACGCTATTCGAGTTGTAGTGAGTCAGGGTATACT
ACAAGCAGAAGTCATGGTAAAA

Protein sequence

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WSSVGTCGFKGTRRGTSFAAQIATRNAIRVVVSQGILQAEVMVK

MC01g1587 (gene) of Bitter gourd (Dali-11) v1 genome