; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC01g1631 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC01g1631
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionprotein LSD1
Genome locationMC01:20505077..20507424
RNA-Seq ExpressionMC01g1631
SyntenyMC01g1631
Gene Ontology termsGO:0007034 - vacuolar transport (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005768 - endosome (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439499.1 PREDICTED: protein LSD1 [Cucumis melo]4.38e-9097.76Show/hide
Query:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS
        GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSVKCAIC YVTNVGISNVRVPIPVHRRNGTISSGMPP+S
Subjt:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS

Query:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

XP_022146603.1 protein LSD1 [Momordica charantia]6.49e-92100Show/hide
Query:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS
        GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS
Subjt:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS

Query:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

XP_023518501.1 protein LSD1-like isoform X1 [Cucurbita pepo subsp. pepo]2.96e-8895.52Show/hide
Query:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS
        GTDMAQLIC GCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTL+FPYGAPSVKCAIC YVTNVG+SNVRVPIPVHRRNGTISSGMPPAS
Subjt:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS

Query:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        SSQSQTVVVENPMSVDESGKLVSN+VVGVTTDKR
Subjt:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

XP_023544395.1 protein LSD1-like [Cucurbita pepo subsp. pepo]1.03e-8895.52Show/hide
Query:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS
        GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSVKCAIC YVTNVG+SNVRVPIPVHRRNGT+ SGMPP+S
Subjt:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS

Query:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

XP_038882803.1 protein LSD1 [Benincasa hispida]4.24e-9097.76Show/hide
Query:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS
        GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSVKCAIC YVTNVGISNVRVPIPVHRRNGTISSGMPP+S
Subjt:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS

Query:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

TrEMBL top hitse value%identityAlignment
A0A0A0KJ18 Uncharacterized protein2.12e-9097.76Show/hide
Query:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS
        GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSVKCAIC YVTNVGISNVRVPIPVHRRNGTISSGMPP+S
Subjt:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS

Query:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

A0A1S3AZJ7 protein LSD12.12e-9097.76Show/hide
Query:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS
        GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSVKCAIC YVTNVGISNVRVPIPVHRRNGTISSGMPP+S
Subjt:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS

Query:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

A0A6J1CZ01 protein LSD13.14e-92100Show/hide
Query:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS
        GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS
Subjt:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS

Query:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

A0A6J1ECU7 vacuolar protein sorting-associated protein 2 homolog 2-like1.96e-8696.27Show/hide
Query:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS
        GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTLVFPYGAPSVKCAIC YVTNVG+SNVRVPIPVHRRNGT+SSGMPP+S
Subjt:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS

Query:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
Subjt:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

A0A6J1KY38 vacuolar protein sorting-associated protein 2 homolog 2-like2.18e-8595.52Show/hide
Query:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS
        GTDMAQLIC GCRTLLMYARGATSVRCSCCHTVNLAP TNQVAHVNCGNCRTTL+FPYGAPSVKCAIC YVTNVG+SNVRVPIPVHRRNGTISSGMPPAS
Subjt:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS

Query:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
        SSQSQTVVVENPMSVDESGKLVSN+VVGVTTDKR
Subjt:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

SwissProt top hitse value%identityAlignment
P94077 Protein LSD11.9e-4767.81Show/hide
Query:  DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTIS
        DMA +ICGGCRT+LMY RGA+SVRCSCC T NL P  +NQVAH        +NCG+CRTTL++PYGA SVKCA+CQ+VTNV +SN RVP+P +R NGT  
Subjt:  DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTIS

Query:  SGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
           PP++S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  SGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

Q0J7V9 Protein LSD13.9e-2975.32Show/hide
Query:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGIS
        GT+MAQL+CGGC TLLMY RGATSV+CSCCHTVNLA   NQVAHVNCGNCR  L++ YGA SVKCA+C +VT+VG S
Subjt:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGIS

Q2QMB3 Protein LOL22.9e-4062.6Show/hide
Query:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS
        G D+A LICGGCRTLLMY R ATSVRCSCC TVNL    + +AH+NCG C+T L++PYGAPSVKCAIC ++TN G++ +R  +P +  + T  S   P +
Subjt:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPAS

Query:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTT
         SQ+ TVVVENPM+VD  GKLVSNVVVGVTT
Subjt:  SSQSQTVVVENPMSVDESGKLVSNVVVGVTT

Q6ASS2 Protein LOL38.5e-4059.31Show/hide
Query:  DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVR-VPIPVHRRNGTISSGMP----
        +MA LICGGCRTLLMY R A +VRCSCC TVNL    N +AHV+CG CRTTL++PYGAPSVKCAIC Y+TN G++ V   P P+   +G+  +  P    
Subjt:  DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVR-VPIPVHRRNGTISSGMP----

Query:  ---------PASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK
                 P S  Q+ TVVVENPM+VDE GKLVSNVVVGVTT K
Subjt:  ---------PASSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDK

Q93ZB1 Protein LOL15.7e-2874.67Show/hide
Query:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVG
        GT+MAQL+CGGC TLLMY RGATSV+CSCCHTVNLA   NQVAHVNCGNC   L++ YGA SVKCA+C +VT+VG
Subjt:  GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVG

Arabidopsis top hitse value%identityAlignment
AT4G20380.1 LSD1 zinc finger family protein1.3e-4867.81Show/hide
Query:  DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTIS
        DMA +ICGGCRT+LMY RGA+SVRCSCC T NL P  +NQVAH        +NCG+CRTTL++PYGA SVKCA+CQ+VTNV +SN RVP+P +R NGT  
Subjt:  DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTIS

Query:  SGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
           PP++S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  SGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

AT4G20380.2 LSD1 zinc finger family protein1.3e-4867.81Show/hide
Query:  DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTIS
        DMA +ICGGCRT+LMY RGA+SVRCSCC T NL P  +NQVAH        +NCG+CRTTL++PYGA SVKCA+CQ+VTNV +SN RVP+P +R NGT  
Subjt:  DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTIS

Query:  SGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
           PP++S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  SGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

AT4G20380.3 LSD1 zinc finger family protein1.3e-4867.81Show/hide
Query:  DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTIS
        DMA +ICGGCRT+LMY RGA+SVRCSCC T NL P  +NQVAH        +NCG+CRTTL++PYGA SVKCA+CQ+VTNV +SN RVP+P +R NGT  
Subjt:  DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTIS

Query:  SGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
           PP++S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  SGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

AT4G20380.4 LSD1 zinc finger family protein1.3e-4867.81Show/hide
Query:  DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTIS
        DMA +ICGGCRT+LMY RGA+SVRCSCC T NL P  +NQVAH        +NCG+CRTTL++PYGA SVKCA+CQ+VTNV +SN RVP+P +R NGT  
Subjt:  DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTIS

Query:  SGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
           PP++S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  SGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR

AT4G20380.5 LSD1 zinc finger family protein1.3e-4867.81Show/hide
Query:  DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTIS
        DMA +ICGGCRT+LMY RGA+SVRCSCC T NL P  +NQVAH        +NCG+CRTTL++PYGA SVKCA+CQ+VTNV +SN RVP+P +R NGT  
Subjt:  DMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPV-TNQVAH--------VNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTIS

Query:  SGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR
           PP++S     SQ+QTVVVENPMSVDESGKLVSNVVVGVTTDK+
Subjt:  SGMPPASS-----SQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAACGGATATGGCTCAACTTATATGTGGAGGTTGCAGGACATTGCTTATGTATGCACGTGGGGCAACAAGTGTTAGATGCTCCTGCTGTCATACAGTGAACCTTGCACC
TGTAACGAACCAGGTTGCGCATGTTAACTGTGGAAACTGCCGAACAACACTTGTCTTTCCATATGGAGCTCCATCTGTCAAGTGTGCGATCTGTCAATATGTTACTAATG
TTGGTATATCCAATGTGAGGGTTCCTATTCCAGTGCACAGGCGTAATGGAACAATTAGCTCTGGAATGCCTCCTGCATCATCATCTCAGAGCCAAACTGTCGTAGTTGAG
AACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTGAGCAATGTTGTTGTCGGTGTGACAACAGATAAAAGGTAA
mRNA sequenceShow/hide mRNA sequence
GGAACGGATATGGCTCAACTTATATGTGGAGGTTGCAGGACATTGCTTATGTATGCACGTGGGGCAACAAGTGTTAGATGCTCCTGCTGTCATACAGTGAACCTTGCACC
TGTAACGAACCAGGTTGCGCATGTTAACTGTGGAAACTGCCGAACAACACTTGTCTTTCCATATGGAGCTCCATCTGTCAAGTGTGCGATCTGTCAATATGTTACTAATG
TTGGTATATCCAATGTGAGGGTTCCTATTCCAGTGCACAGGCGTAATGGAACAATTAGCTCTGGAATGCCTCCTGCATCATCATCTCAGAGCCAAACTGTCGTAGTTGAG
AACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTGAGCAATGTTGTTGTCGGTGTGACAACAGATAAAAGGTAACATGGTGAGATGATGGTGATTGATGGCATCTACTA
TTAGCGGCTTAAAAGAGATGGGAGGAAGCGATCTTAATATCTAGTACATTACTATACTGCTTGGAATATGAATATGGAATATGGTTATGGAAATTTCTGTATAGTTTGTC
TCCGAAGTGTCCTTGAGGTCACCATTCATTCTTGAGTCAACTTCAATTTGAGGTTCAGAGAACTTTTTACCCTGTGAATGTGATGTATATTGTGGACCAGAAGAATTGAA
GGGTCTGTACTGTATCTATCGTGTGATTTCTGTACCGAGTCATTGAGCTGTCTCGCAAGTAAAAATATTTATACATACATCGTATCTCCCCTCAGGTAAATATGAGTAAT
AACGTTGAATTGTAATTTCTGTTTCCTTGATTGGTAATATGCATTTTGGATTTTGTTGGTTT
Protein sequenceShow/hide protein sequence
GTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPVTNQVAHVNCGNCRTTLVFPYGAPSVKCAICQYVTNVGISNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVE
NPMSVDESGKLVSNVVVGVTTDKR