CuGenDBv2

Gene ID	MC01g1638
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribosome biogenesis protein
Genome location	MC01:20577899..20580541
RNA-Seq Expression	MC01g1638
Synteny	MC01g1638
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005730 - nucleolus (cellular component) GO:0030686 - 90S preribosome (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domains	IPR028160 - Ribosome biogenesis protein Slx9-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004144346.1 putative ribosome biogenesis protein slx9-like [Cucumis sativus]

1.37e-78

81.41

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Query:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKF+KKVQFYERVGET+T LNAQK+I+K    R RK+ LKAFDL+TLSEFLPGLEA KQK SAAELK+NCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG

Query:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQM
        TVLNHP FQADPL+A+ LHLE TQP+EEPKKK  NKNGSKKRKEKK KASA P  M
Subjt:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQM

XP_022146719.1 putative ribosome biogenesis protein slx9-like isoform X1 [Momordica charantia]

2.80e-105

99.4

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Query:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISK-NSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQM
        MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISK NSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQM
Subjt:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISK-NSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQM

Query:  GTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQMCVGLFGLSLD
        GTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQMCVGLFGLSLD
Subjt:  GTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQMCVGLFGLSLD

XP_022146723.1 putative ribosome biogenesis protein slx9-like isoform X2 [Momordica charantia]

4.01e-107

100

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Query:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG
        MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG

Query:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQMCVGLFGLSLD
        TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQMCVGLFGLSLD
Subjt:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQMCVGLFGLSLD

XP_023515417.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo]

3.80e-78

82.05

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Query:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG
        MGKP SRSDSKSKAERKF+KK+QFYERVGET+  LNAQKTI+K  K R RK+ LKAFDLT LSEFLPGL+APKQK+S  ELKVNCKSRLKF+LKE KQMG
Subjt:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG

Query:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQM
        TVLNHPAFQADPL AIHLHLESTQPVEEPKKK TN+NGSKKRKEKK KA+A P  M
Subjt:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQM

XP_038900086.1 putative ribosome biogenesis protein slx9-like [Benincasa hispida]

3.26e-79

83.33

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Query:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG
        MGKPVSRSDSKSKAERKF+KKVQFYERVGET++ LNAQKTI+K    R RK+ LKAFDL+TLSEFLPGLEAPKQK SAAELK+NCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG

Query:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQM
        TVLNHP FQADPL+AI LHLE TQP+EEPKKK TNKNGSKKRKEKK KAS  P  M
Subjt:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L113 Uncharacterized protein

6.64e-79

81.41

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Query:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKF+KKVQFYERVGET+T LNAQK+I+K    R RK+ LKAFDL+TLSEFLPGLEA KQK SAAELK+NCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG

Query:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQM
        TVLNHP FQADPL+A+ LHLE TQP+EEPKKK  NKNGSKKRKEKK KASA P  M
Subjt:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQM

A0A5D3BQL6 Putative ribosome biogenesis protein slx9-like

5.44e-78

80.77

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Query:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG
        MGKPVSRSD KSKAERKF+KKVQFYERVGE++  LNAQK+I+K    R RK+ LKAFDL+TLSEFLPGLEA KQK SAAELK+NCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG

Query:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQM
        TVLNHP FQADPL+A+ LHLE TQP EEPKKK  NKNGSKKRKEKKLKASA P  M
Subjt:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQM

A0A6J1CYW4 putative ribosome biogenesis protein slx9-like isoform X1

1.36e-105

99.4

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Query:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISK-NSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQM
        MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISK NSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQM
Subjt:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISK-NSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQM

Query:  GTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQMCVGLFGLSLD
        GTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQMCVGLFGLSLD
Subjt:  GTVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQMCVGLFGLSLD

A0A6J1CZB1 putative ribosome biogenesis protein slx9-like isoform X2

1.94e-107

100

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Query:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG
        MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG
Subjt:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG

Query:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQMCVGLFGLSLD
        TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQMCVGLFGLSLD
Subjt:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQMCVGLFGLSLD

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like

8.70e-77

80.77

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Query:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG
        MGKP SRSDSKSKAERKF+KK+QFYERVGET+  LNAQKTI+K  K R RK+ LKAFDLT LSEFLPGL+APKQK+S  ELKVNCKSRLKF+LKE KQMG
Subjt:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMG

Query:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQM
        TVLNHPAFQADPL AIHLHL+STQPVEE KKK TN+NGSKKRKEKK KA+A P  M
Subjt:  TVLNHPAFQADPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G01640.1 unknown protein

1.4e-34

54.9

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Query:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEA-PKQKSSAAELKVNCKSRLKFILKERKQM
        MGKP   S+  +K+++KF+KK+QFY +V +TVT+L+ QK I K  K RSR+K+LKA+DLT LSEFLP   A  K    A ELK+NCK R K +L E +++
Subjt:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEA-PKQKSSAAELKVNCKSRLKFILKERKQM

Query:  GTVLNHPAFQADPLKAIHLHLESTQ-PVEEPKKKNTNKNGSKKRKEKKLKASA
          VL+HPAFQADP+ +I  HL S Q PVEE  KK TN NGSKKR +KK K  +
Subjt:  GTVLNHPAFQADPLKAIHLHLESTQ-PVEEPKKKNTNKNGSKKRKEKKLKASA

AT2G01640.2 unknown protein

1.4e-34

54.9

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Query:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEA-PKQKSSAAELKVNCKSRLKFILKERKQM
        MGKP   S+  +K+++KF+KK+QFY +V +TVT+L+ QK I K  K RSR+K+LKA+DLT LSEFLP   A  K    A ELK+NCK R K +L E +++
Subjt:  MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEA-PKQKSSAAELKVNCKSRLKFILKERKQM

Query:  GTVLNHPAFQADPLKAIHLHLESTQ-PVEEPKKKNTNKNGSKKRKEKKLKASA
          VL+HPAFQADP+ +I  HL S Q PVEE  KK TN NGSKKR +KK K  +
Subjt:  GTVLNHPAFQADPLKAIHLHLESTQ-PVEEPKKKNTNKNGSKKRKEKKLKASA

Sequences

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CDS sequence

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ATGGGCAAACCGGTCTCTCGGTCGGATTCGAAATCTAAAGCCGAACGAAAATTTCAAAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACCGTTACTGCCTTGAATGC
TCAAAAAACCATTAGTAAGAACTCAAAAAAGCGAAGTCGAAAAAAGCAGTTGAAAGCTTTCGATCTGACCACTCTGTCAGAGTTTCTTCCTGGATTGGAGGCTCCTAAAC
AAAAATCTTCTGCAGCCGAGTTAAAAGTAAATTGCAAGTCCAGGCTAAAGTTTATATTGAAGGAAAGAAAGCAGATGGGTACAGTTCTTAATCACCCTGCATTCCAGGCA
GATCCCTTGAAAGCTATTCATCTACATTTGGAGAGCACACAGCCAGTTGAGGAACCAAAGAAAAAAAATACGAACAAAAATGGGAGCAAGAAGAGGAAAGAGAAAAAGTT
GAAGGCTTCTGCAGGACCTCAACAAATGTGTGTTGGTCTTTTTGGTCTTAGTCTTGATTAA

mRNA sequence

Show/hide mRNA sequence

CAATTTTAAAGTTCAGTGACGATTTTTTATTTTTATTTTTTTGTTGAGCTGTGCAGGGGAGAGTTAATCTCAACCAATTTTCTCAGACAAACCCTATTTCATCAGCATAC
TTGAGTTGAGTTCGCCGATTTTCTCCGGGAATCTCATCTCAGAATCAGAACCAGGATTAATTCTTTTGATCAAGTCATCAGAAAGCTCGCAAGTTTTAATTATGGGCAAA
CCGGTCTCTCGGTCGGATTCGAAATCTAAAGCCGAACGAAAATTTCAAAAGAAGGTCCAGTTTTATGAGAGAGTTGGAGAAACCGTTACTGCCTTGAATGCTCAAAAAAC
CATTAGTAAGAACTCAAAAAAGCGAAGTCGAAAAAAGCAGTTGAAAGCTTTCGATCTGACCACTCTGTCAGAGTTTCTTCCTGGATTGGAGGCTCCTAAACAAAAATCTT
CTGCAGCCGAGTTAAAAGTAAATTGCAAGTCCAGGCTAAAGTTTATATTGAAGGAAAGAAAGCAGATGGGTACAGTTCTTAATCACCCTGCATTCCAGGCAGATCCCTTG
AAAGCTATTCATCTACATTTGGAGAGCACACAGCCAGTTGAGGAACCAAAGAAAAAAAATACGAACAAAAATGGGAGCAAGAAGAGGAAAGAGAAAAAGTTGAAGGCTTC
TGCAGGACCTCAACAAATGTGTGTTGGTCTTTTTGGTCTTAGTCTTGATTAATTAATTAATGTTTTGTTTTGATGATAACAAACACATTTAGTGTAACGGTTTTGAATCT
CCTAAGTTGGAGTTAAAATGAAAAAAAGTTATTGAGAAAACAGAAAACATCTTATTTTGAATTTACTTTGTATTCAATGTGCTAGTTTTATGTTTTTGTATTTTGAATTT
ACTTTTATCAACAGTTGAGATTTCATGTTCACATAGCTTATCTGATTAAGATTAAGATGTATACCTTCCGTTAAAAGATGTATATTTCTATTAAAAGGTTGACAATTCTG
AAA

Protein sequence

Show/hide protein sequence

MGKPVSRSDSKSKAERKFQKKVQFYERVGETVTALNAQKTISKNSKKRSRKKQLKAFDLTTLSEFLPGLEAPKQKSSAAELKVNCKSRLKFILKERKQMGTVLNHPAFQA
DPLKAIHLHLESTQPVEEPKKKNTNKNGSKKRKEKKLKASAGPQQMCVGLFGLSLD

MC01g1638 (gene) of Bitter gourd (Dali-11) v1 genome