; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC01g1642 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC01g1642
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionglycine-rich RNA-binding protein 4, mitochondrial
Genome locationMC01:20611115..20614034
RNA-Seq ExpressionMC01g1642
SyntenyMC01g1642
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR003954 - RNA recognition motif domain, eukaryote
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439484.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]2.43e-8477.92Show/hide
Query:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWA+TVS P + N R P+  +NP   + R SLNLRASFFDYPLASR+MVRNLPYST+E RLQEEFS+FGE+AEVLLAKDR TKRP+GYAFIQYTCQDDAM
Subjt:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLELEEVADCWY
        LALENMD K FDGRTIYVE+A+PGS SFGGYPRTSGPPKERP +E E++ADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLELEEVADCWY

XP_022146475.1 glycine-rich RNA-binding protein 4, mitochondrial [Momordica charantia]1.01e-110100Show/hide
Query:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
Subjt:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLELEEVADCWY
        LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLELEEVADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLELEEVADCWY

XP_022926008.1 small RNA-binding protein 11, chloroplastic [Cucurbita moschata]1.18e-8079.49Show/hide
Query:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWA+TVSFP L N R PI LSN    + RQSLNLRASF DYPLASR+MVRNLPYST+E RLQEEFS+FGE+AEVLLAKDR+TK P+GYAFIQYT QDDAM
Subjt:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERP--KLELEEVADCWY
        LALENMD KKFDGRTIYVE+A+PGS SF GYP TSGPPKERP  KL  EEVADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERP--KLELEEVADCWY

XP_022977992.1 small RNA-binding protein 11, chloroplastic [Cucurbita maxima]2.04e-8179.49Show/hide
Query:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWA+TVSFP L N R PI L+N    + RQSLNLRASF DYPLASR+MVRNLPYST+E RLQEEFS+FGE+AEVLLAKDR+TK P+GYAFIQYT QDDAM
Subjt:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERP--KLELEEVADCWY
        LALENMD KKFDGRTIYVE+A+PGS SFGGYP TSGPPKERP  KL  EEVADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERP--KLELEEVADCWY

XP_038883016.1 organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa hispida]2.16e-8070.11Show/hide
Query:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVR--------------------NLPYSTDEGRLQEEFSSFGEVAEVLLAKDR
        MWA+TVSFP + N R PIL +N T G+ R SLN RASF DYPLASR++VR                    +LPYST E RLQEEFS+FGE+AEVLLAKD+
Subjt:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVR--------------------NLPYSTDEGRLQEEFSSFGEVAEVLLAKDR

Query:  VTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLELEEVADCWY
        +TKRP+GYAFIQYTCQDDAMLALENMD KKFDGR IYVE+A+PGS SFGGYPRTSGPPKERPK+EL+EVADCWY
Subjt:  VTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLELEEVADCWY

TrEMBL top hitse value%identityAlignment
A0A0A0KL21 RRM domain-containing protein3.38e-7874.68Show/hide
Query:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWA+TVSFP + N R PI  +N    + R SLNLRASFFDYPLASR+MVRNLPYST+E RLQEEFS+FGE+AEVLLAKDR TKRP+GYAFIQYTCQDDAM
Subjt:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPK----LELEEVADCWY
        LALE MD K FDGR IYVE+A PGS SFGGYPR SGPPKERP     ++ E+VADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPK----LELEEVADCWY

A0A1S3AYG0 glycine-rich RNA-binding protein 4, mitochondrial1.18e-8477.92Show/hide
Query:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWA+TVS P + N R P+  +NP   + R SLNLRASFFDYPLASR+MVRNLPYST+E RLQEEFS+FGE+AEVLLAKDR TKRP+GYAFIQYTCQDDAM
Subjt:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLELEEVADCWY
        LALENMD K FDGRTIYVE+A+PGS SFGGYPRTSGPPKERP +E E++ADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLELEEVADCWY

A0A6J1CXC0 glycine-rich RNA-binding protein 4, mitochondrial4.90e-111100Show/hide
Query:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
Subjt:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLELEEVADCWY
        LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLELEEVADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLELEEVADCWY

A0A6J1EGU7 small RNA-binding protein 11, chloroplastic5.72e-8179.49Show/hide
Query:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWA+TVSFP L N R PI LSN    + RQSLNLRASF DYPLASR+MVRNLPYST+E RLQEEFS+FGE+AEVLLAKDR+TK P+GYAFIQYT QDDAM
Subjt:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERP--KLELEEVADCWY
        LALENMD KKFDGRTIYVE+A+PGS SF GYP TSGPPKERP  KL  EEVADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERP--KLELEEVADCWY

A0A6J1IJY1 small RNA-binding protein 11, chloroplastic9.89e-8279.49Show/hide
Query:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MWA+TVSFP L N R PI L+N    + RQSLNLRASF DYPLASR+MVRNLPYST+E RLQEEFS+FGE+AEVLLAKDR+TK P+GYAFIQYT QDDAM
Subjt:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERP--KLELEEVADCWY
        LALENMD KKFDGRTIYVE+A+PGS SFGGYP TSGPPKERP  KL  EEVADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERP--KLELEEVADCWY

SwissProt top hitse value%identityAlignment
Q9DED4 Cold-inducible RNA-binding protein B1.7e-1240.23Show/hide
Query:  RVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVA-RPGSDSFGGY
        ++ +  L + T+E  L++ FS +G+++EV++ KDR TKR RG+ F+ +   DDA  A+  M+GK  DGR I V+ A +   D  GGY
Subjt:  RVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVA-RPGSDSFGGY

Q9FFZ6 Small RNA-binding protein 11, chloroplastic3.5e-1336.73Show/hide
Query:  LASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSD--SFGGYPRTSGPP
        +AS++ +  L + T E  L E FS  G+V E  +  DRV+ R +G+ F+ +   D+A  AL   +G++ +GRTI+V+ A+        GGYP   GPP
Subjt:  LASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSD--SFGGYPRTSGPP

Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic4.1e-1436Show/hide
Query:  SRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGP-PKERPK
        +++ V  L + T E  L++ F  FG +  + +  D+V  RP+G+AF++Y  +++AM A++ M GK  DGR I+VE A+  SD     PR   P P+ +P+
Subjt:  SRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGP-PKERPK

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial1.8e-1441.3Show/hide
Query:  LASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGS----DSFGG
        ++S++ V  L + TD+  L++ F+SFGEV E  +  DR T R RG+ F+ ++C+D A  A++ MDGK+ +GR I V +A   S     SFGG
Subjt:  LASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGS----DSFGG

W8E7I1 RNA-binding protein 32.0e-1339.39Show/hide
Query:  RVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGS-----DSFGGYPRTSGPPK
        ++ V  L ++TDE  L++ FSSFG ++EV++ KDR T+R RG+ FI +T  + A  A+  M+G+  DGR I V+ A   +      +FG Y R  G P+
Subjt:  RVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGS-----DSFGGYPRTSGPPK

Arabidopsis top hitse value%identityAlignment
AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.9e-1536Show/hide
Query:  SRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGP-PKERPK
        +++ V  L + T E  L++ F  FG +  + +  D+V  RP+G+AF++Y  +++AM A++ M GK  DGR I+VE A+  SD     PR   P P+ +P+
Subjt:  SRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGP-PKERPK

AT3G23830.1 glycine-rich RNA-binding protein 41.3e-1541.3Show/hide
Query:  LASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGS----DSFGG
        ++S++ V  L + TD+  L++ F+SFGEV E  +  DR T R RG+ F+ ++C+D A  A++ MDGK+ +GR I V +A   S     SFGG
Subjt:  LASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGS----DSFGG

AT3G23830.2 glycine-rich RNA-binding protein 41.3e-1541.3Show/hide
Query:  LASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGS----DSFGG
        ++S++ V  L + TD+  L++ F+SFGEV E  +  DR T R RG+ F+ ++C+D A  A++ MDGK+ +GR I V +A   S     SFGG
Subjt:  LASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGS----DSFGG

AT4G20030.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-4151.59Show/hide
Query:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM
        MW++T+SFP  +        S P +   R    ++AS F+YPLAS++MVRNLP+ST E  L+ EFS+FGE+AEV L KD   KR +GYAFIQ+T QDDA 
Subjt:  MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAM

Query:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLE---LEEVADCWY
        LA+E MD + ++GR IY+++A+PG   F G PRTSGPP++  + E    +EVADCWY
Subjt:  LALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLE---LEEVADCWY

AT5G08695.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.0e-1540Show/hide
Query:  ASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPK
        A R+ V  LPYST E  L E FS FG+++EV L  D+ T+  RG AF+ Y   + A +A++ +D   F GRT+++  A+P + S      +S  PK   K
Subjt:  ASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEVARPGSDSFGGYPRTSGPPKERPK

Query:  LELEE
         E EE
Subjt:  LELEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGCTTCCACCGTCTCCTTCCCTTGTCTTTTAAACCCTCGTTTTCCAATTCTTCTCAGTAATCCAACCCATGGTACAGCCCGTCAATCTCTCAATCTTCGAGCTTC
TTTCTTTGATTATCCCCTTGCCAGCAGAGTCATGGTTAGAAATTTACCATACTCTACCGATGAGGGTCGGCTGCAAGAAGAATTTTCAAGTTTTGGTGAGGTTGCTGAAG
TGTTATTAGCAAAAGATAGAGTAACAAAAAGACCGAGAGGTTACGCGTTTATTCAATACACTTGCCAAGACGATGCAATGCTGGCACTGGAAAATATGGATGGCAAGAAA
TTTGATGGAAGGACGATCTATGTGGAAGTTGCAAGACCTGGGAGTGATTCTTTTGGAGGATATCCAAGAACCTCTGGACCCCCGAAAGAGCGGCCGAAACTGGAGCTAGA
AGAGGTGGCAGATTGCTGGTATTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAATTGAAATAAAAATAATTTCGGGCTATGGAAATGTAAAACCGAATTCGGAAGGAACGAACAGATTTCCCACGGCGTCGTCTGAGCACGAACATGTGGGCTTCCAC
CGTCTCCTTCCCTTGTCTTTTAAACCCTCGTTTTCCAATTCTTCTCAGTAATCCAACCCATGGTACAGCCCGTCAATCTCTCAATCTTCGAGCTTCTTTCTTTGATTATC
CCCTTGCCAGCAGAGTCATGGTTAGAAATTTACCATACTCTACCGATGAGGGTCGGCTGCAAGAAGAATTTTCAAGTTTTGGTGAGGTTGCTGAAGTGTTATTAGCAAAA
GATAGAGTAACAAAAAGACCGAGAGGTTACGCGTTTATTCAATACACTTGCCAAGACGATGCAATGCTGGCACTGGAAAATATGGATGGCAAGAAATTTGATGGAAGGAC
GATCTATGTGGAAGTTGCAAGACCTGGGAGTGATTCTTTTGGAGGATATCCAAGAACCTCTGGACCCCCGAAAGAGCGGCCGAAACTGGAGCTAGAAGAGGTGGCAGATT
GCTGGTATTGATATTGTTCTTACTGAGATACACACAATATAGAATAGATGACTTAACAGTTAATGACAGTTCTGCCCGATGAGATCGATTCCAAAGAATTTGTGCTTGAA
GGATTGTTTGATGTGAGTGATGGATTCATTACATTTATACATATAGTTTCAAGCTTTAAATTCTGATGCCATTCTGCAGCTCTTCTCCCGCAATTTGTACGCAACTGTTT
AAGAGAC
Protein sequenceShow/hide protein sequence
MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGRLQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKK
FDGRTIYVEVARPGSDSFGGYPRTSGPPKERPKLELEEVADCWY