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MC02g0109 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC02g0109
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic
Genome locationMC02:1121187..1121591
RNA-Seq ExpressionMC02g0109
SyntenyMC02g0109
Gene Ontology termsNA
InterPro domainsIPR040296 - Photosystem II 5kDa protein, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143237.1 photosystem II 5 kDa protein, chloroplastic [Cucumis sativus]6.54e-3775.7Show/hide
Query:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM
        MAS A+ ASFLP TA K PS+  RR LIVAKAS + N AS  N+E+ ++V+VES QGRRELVAAAVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTM
Subjt:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

XP_008449703.1 PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo]1.76e-4067.86Show/hide
Query:  PTPKHYHYILLL--PLSLLSQHKSN--FSKSPKMASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVT
        PT  + +YIL L  P+  L  + SN  FS    MAS A+ ASFLP TA K PSA  RRALIVAKAS + N+ S  NLE+ ++V+VES QGRRELVAAAVT
Subjt:  PTPKHYHYILLL--PLSLLSQHKSN--FSKSPKMASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVT

Query:  VAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR
        VAAATLAKAAMADEP RGS EAKQKYAP+CVTMPTARICR
Subjt:  VAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR

XP_022148791.1 photosystem II 5 kDa protein, chloroplastic [Momordica charantia]8.37e-61100Show/hide
Query:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP
        MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP
Subjt:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP

Query:  TARICR
        TARICR
Subjt:  TARICR

XP_022944588.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata]2.11e-3676.36Show/hide
Query:  MASTAIAASFLPLTAKHPSAAT-RRALIVAKAS--AAANDA-SKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVC
        MAS +I ASFLP TA  PSAA  RRAL V KAS  AAA D+ S  NLE+ ++V+VES QGRRELVAAAVTVAAAT AKAAMADEP RGSAEAKQKYAP+C
Subjt:  MASTAIAASFLPLTAKHPSAAT-RRALIVAKAS--AAANDA-SKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVC

Query:  VTMPTARICR
        VTMPTARICR
Subjt:  VTMPTARICR

XP_038901593.1 photosystem II 5 kDa protein, chloroplastic [Benincasa hispida]5.64e-3876.64Show/hide
Query:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM
        MAS A+ ASFLP TA K PS A RRAL+VAKAS + +DAS  NLE+ ++V+VE+ QGRRELVAAAVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTM
Subjt:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

TrEMBL top hitse value%identityAlignment
A0A0A0KIB2 Uncharacterized protein3.17e-3775.7Show/hide
Query:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM
        MAS A+ ASFLP TA K PS+  RR LIVAKAS + N AS  N+E+ ++V+VES QGRRELVAAAVTVAAATLAKAAMADEP RGS EAKQKYAP+CVTM
Subjt:  MASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTM

Query:  PTARICR
        PTARICR
Subjt:  PTARICR

A0A1S3BML8 photosystem II 5 kDa protein, chloroplastic8.53e-4167.86Show/hide
Query:  PTPKHYHYILLL--PLSLLSQHKSN--FSKSPKMASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVT
        PT  + +YIL L  P+  L  + SN  FS    MAS A+ ASFLP TA K PSA  RRALIVAKAS + N+ S  NLE+ ++V+VES QGRRELVAAAVT
Subjt:  PTPKHYHYILLL--PLSLLSQHKSN--FSKSPKMASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVT

Query:  VAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR
        VAAATLAKAAMADEP RGS EAKQKYAP+CVTMPTARICR
Subjt:  VAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR

A0A5A7TID9 Photosystem II 5 kDa protein8.53e-4167.86Show/hide
Query:  PTPKHYHYILLL--PLSLLSQHKSN--FSKSPKMASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVT
        PT  + +YIL L  P+  L  + SN  FS    MAS A+ ASFLP TA K PSA  RRALIVAKAS + N+ S  NLE+ ++V+VES QGRRELVAAAVT
Subjt:  PTPKHYHYILLL--PLSLLSQHKSN--FSKSPKMASTAIAASFLPLTA-KHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVT

Query:  VAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR
        VAAATLAKAAMADEP RGS EAKQKYAP+CVTMPTARICR
Subjt:  VAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMPTARICR

A0A6J1D6G0 photosystem II 5 kDa protein, chloroplastic4.05e-61100Show/hide
Query:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP
        MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP
Subjt:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVTMP

Query:  TARICR
        TARICR
Subjt:  TARICR

A0A6J1J874 photosystem II 5 kDa protein, chloroplastic1.02e-3676.36Show/hide
Query:  MASTAIAASFLPLTAKHPSAAT-RRALIVAKAS--AAANDA-SKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVC
        MAS +I ASFLP TA  PSAA  RRAL V KAS  AAA D+ S  NLE+ ++V+VES QGRRELVAAAVTVAAAT AKAAMADEP RGSAEAKQKYAP+C
Subjt:  MASTAIAASFLPLTAKHPSAAT-RRALIVAKAS--AAANDA-SKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVC

Query:  VTMPTARICR
        VTMPTARICR
Subjt:  VTMPTARICR

SwissProt top hitse value%identityAlignment
B3EWI4 Photosystem II 5 kDa protein, chloroplastic1.2e-0943.64Show/hide
Query:  MASTAIAASFLPLTAKHPS---AATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMAD-EPKRGSAEAKQKYAPVC
        MAS  + +SFL  +   P+   +A RR +++ KA     +    N+ ++++ + ++  GRREL  A    AA ++AK AMAD EPKRG+ EAK+KY+ VC
Subjt:  MASTAIAASFLPLTAKHPS---AATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMAD-EPKRGSAEAKQKYAPVC

Query:  VTMPTARICR
        VT PTARICR
Subjt:  VTMPTARICR

P31336 Photosystem II 5 kDa protein, chloroplastic2.6e-1249.07Show/hide
Query:  MASTAIAASFLPLT--AKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVT
        MAS  +  SFL  T   K     T+R L+VA    AA  A   +++M+   + E   GRRE++ AA   A  ++A  A A EPKRGSAEAK+ YAPVCVT
Subjt:  MASTAIAASFLPLT--AKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEPKRGSAEAKQKYAPVCVT

Query:  MPTARICR
        MPTARICR
Subjt:  MPTARICR

Q39195 Photosystem II 5 kDa protein, chloroplastic6.8e-1349.07Show/hide
Query:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMA--DEPKRGSAEAKQKYAPVCVT
        MAS  + A+F P  AK PSA   R L V +AS + N    P+LE+    +  S   RR+L+  A   A  +LAK AMA  +EPKRG+  AK+KYA VCVT
Subjt:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMA--DEPKRGSAEAKQKYAPVCVT

Query:  MPTARICR
        MPTA+ICR
Subjt:  MPTARICR

Arabidopsis top hitse value%identityAlignment
AT1G51400.1 Photosystem II 5 kD protein3.0e-1650Show/hide
Query:  MASTAIAASFLPLTAKHP---SAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMA-DEPKRGSAEAKQKYAPVC
        MAS  + +SFLP  +  P   S+ +RR+L V KAS + N  S  N +  +S+++     RR+LV  A   A  +LAK AMA DEPKRG+  AK+KYAPVC
Subjt:  MASTAIAASFLPLTAKHP---SAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMA-DEPKRGSAEAKQKYAPVC

Query:  VTMPTARICR
        VTMPTA+ICR
Subjt:  VTMPTARICR

AT3G21055.1 photosystem II subunit T4.8e-1449.07Show/hide
Query:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMA--DEPKRGSAEAKQKYAPVCVT
        MAS  + A+F P  AK PSA   R L V +AS + N    P+LE+    +  S   RR+L+  A   A  +LAK AMA  +EPKRG+  AK+KYA VCVT
Subjt:  MASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMA--DEPKRGSAEAKQKYAPVCVT

Query:  MPTARICR
        MPTA+ICR
Subjt:  MPTARICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCCACTCCCAAACATTACCACTATATCCTTCTTCTCCCACTCTCTCTTCTCTCTCAACACAAATCCAATTTCTCCAAATCCCCAAAAATGGCGTCCACCGCAATCGCAGC
CTCCTTCCTCCCCCTCACCGCCAAGCATCCCTCCGCCGCTACCCGGAGAGCCCTAATCGTGGCCAAGGCCTCCGCCGCCGCGAACGACGCGTCCAAGCCCAACTTGGAGA
TGAATAGGAGTGTGCAGGTGGAGAGCTGGCAGGGGCGGCGGGAGTTGGTGGCGGCCGCCGTGACGGTGGCTGCGGCCACCTTGGCCAAGGCAGCGATGGCGGACGAGCCG
AAGCGCGGCAGCGCAGAAGCGAAACAGAAGTATGCTCCGGTGTGCGTCACAATGCCCACTGCGCGCATCTGTCGC
mRNA sequenceShow/hide mRNA sequence
CCCACTCCCAAACATTACCACTATATCCTTCTTCTCCCACTCTCTCTTCTCTCTCAACACAAATCCAATTTCTCCAAATCCCCAAAAATGGCGTCCACCGCAATCGCAGC
CTCCTTCCTCCCCCTCACCGCCAAGCATCCCTCCGCCGCTACCCGGAGAGCCCTAATCGTGGCCAAGGCCTCCGCCGCCGCGAACGACGCGTCCAAGCCCAACTTGGAGA
TGAATAGGAGTGTGCAGGTGGAGAGCTGGCAGGGGCGGCGGGAGTTGGTGGCGGCCGCCGTGACGGTGGCTGCGGCCACCTTGGCCAAGGCAGCGATGGCGGACGAGCCG
AAGCGCGGCAGCGCAGAAGCGAAACAGAAGTATGCTCCGGTGTGCGTCACAATGCCCACTGCGCGCATCTGTCGC
Protein sequenceShow/hide protein sequence
PTPKHYHYILLLPLSLLSQHKSNFSKSPKMASTAIAASFLPLTAKHPSAATRRALIVAKASAAANDASKPNLEMNRSVQVESWQGRRELVAAAVTVAAATLAKAAMADEP
KRGSAEAKQKYAPVCVTMPTARICR