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MC02g0188 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC02g0188
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDNA polymerase epsilon subunit 3
Genome locationMC02:1805475..1805989
RNA-Seq ExpressionMC02g0188
SyntenyMC02g0188
Gene Ontology termsGO:0006272 - leading strand elongation (biological process)
GO:0006974 - cellular response to DNA damage stimulus (biological process)
GO:0031507 - heterochromatin assembly (biological process)
GO:0042766 - nucleosome mobilization (biological process)
GO:0008622 - epsilon DNA polymerase complex (cellular component)
GO:0008623 - CHRAC (cellular component)
GO:0031490 - chromatin DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605978.1 DNA polymerase epsilon subunit 3, partial [Cucurbita argyrosperma subsp. sororia]9.57e-5797.94Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN
        MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLN
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN

KAG7035929.1 DNA polymerase epsilon subunit 3 [Cucurbita argyrosperma subsp. argyrosperma]7.42e-5797.94Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN
        MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLN
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN

XP_022152961.1 DNA polymerase epsilon subunit 3 [Momordica charantia]4.35e-58100Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN
        MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN

XP_022958709.1 DNA polymerase epsilon subunit 3 [Cucurbita moschata]7.42e-5797.94Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN
        MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLN
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN

XP_023533668.1 DNA polymerase epsilon subunit 3 [Cucurbita pepo subsp. pepo]7.42e-5797.94Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN
        MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLN
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN

TrEMBL top hitse value%identityAlignment
A0A1S3BNA4 DNA polymerase epsilon subunit D7.14e-5593.81Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN
        MEKK+ A IEELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT+NDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLN
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN

A0A5A7V2B9 DNA polymerase epsilon subunit D isoform X12.65e-5390.1Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSAT----SNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        MEKK+ A IEELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT    +NDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASL
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSAT----SNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Query:  N
        N
Subjt:  N

A0A6J1DJA4 DNA polymerase epsilon subunit 32.11e-58100Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN
        MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN

A0A6J1H495 DNA polymerase epsilon subunit 33.59e-5797.94Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN
        MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLN
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN

A0A6J1K184 DNA polymerase epsilon subunit 36.37e-5796.91Show/hide
Query:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN
        MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESAR+FIHYLSATSNDICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLN
Subjt:  MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN

SwissProt top hitse value%identityAlignment
Q3SZN5 DNA polymerase epsilon subunit 37.3e-0934.12Show/hide
Query:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ +N+   + KR+T+ A DVL A+E+MEF   V PLK +L
Subjt:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Q5R4W3 DNA polymerase epsilon subunit 37.3e-0934.12Show/hide
Query:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ +N+   + KR+T+ A DVL A+E+MEF   V PLK +L
Subjt:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Q642A5 DNA polymerase epsilon subunit 37.3e-0934.12Show/hide
Query:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ +N+   + KR+T+ A DVL A+E+MEF   V PLK +L
Subjt:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Q9JKP7 DNA polymerase epsilon subunit 39.5e-0932.94Show/hide
Query:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ +N+   + KR+T+ A DVL A+E+MEF   + PLK +L
Subjt:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Q9NRF9 DNA polymerase epsilon subunit 37.3e-0934.12Show/hide
Query:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ +N+   + KR+T+ A DVL A+E+MEF   V PLK +L
Subjt:  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

Arabidopsis top hitse value%identityAlignment
AT2G27470.1 nuclear factor Y, subunit B112.9e-2967.05Show/hide
Query:  IEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL
        ++ELP  IVRRVVK+KLS+CS + D+S++K++LLAF ESARIFIHYLSAT+ND CK+++RQT+KADDV KALE+M+F E + PLK+SL
Subjt:  IEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASL

AT5G08190.1 nuclear factor Y, subunit B121.7e-0531.82Show/hide
Query:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS
        E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SN++C +  ++TI  + VLKAL+ + F E V  + A+
Subjt:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS

AT5G23090.1 nuclear factor Y, subunit B131.0e-0531.82Show/hide
Query:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS
        E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SND+C +  ++TI  + VLKAL+ + F E +  + A+
Subjt:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS

AT5G23090.2 nuclear factor Y, subunit B131.0e-0531.82Show/hide
Query:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS
        E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SND+C +  ++TI  + VLKAL+ + F E +  + A+
Subjt:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS

AT5G23090.4 nuclear factor Y, subunit B131.0e-0531.82Show/hide
Query:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS
        E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SND+C +  ++TI  + VLKAL+ + F E +  + A+
Subjt:  EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGAAAGTAGCGGCGGAGATCGAAGAGCTTCCCAAGACCATTGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCCCGGAACCAAGACATTTCCGTCAA
CAAAGACTCGCTTCTTGCCTTCTGCGAGAGCGCTCGAATCTTCATTCACTACCTCTCCGCTACGTCGAATGATATATGCAAGGAATCGAAGAGGCAGACGATAAAGGCGG
ATGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAGTTGGTTAGGCCTCTCAAAGCCTCCCTCAAT
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGAAAGTAGCGGCGGAGATCGAAGAGCTTCCCAAGACCATTGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCCCGGAACCAAGACATTTCCGTCAA
CAAAGACTCGCTTCTTGCCTTCTGCGAGAGCGCTCGAATCTTCATTCACTACCTCTCCGCTACGTCGAATGATATATGCAAGGAATCGAAGAGGCAGACGATAAAGGCGG
ATGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAGTTGGTTAGGCCTCTCAAAGCCTCCCTCAAT
Protein sequenceShow/hide protein sequence
MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKADDVLKALEDMEFPELVRPLKASLN