; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MC02g0536 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC02g0536
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionhigh mobility group B protein 3-like
Genome locationMC02:4368344..4370610
RNA-Seq ExpressionMC02g0536
SyntenyMC02g0536
Gene Ontology termsGO:0006333 - chromatin assembly or disassembly (biological process)
GO:0000785 - chromatin (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003682 - chromatin binding (molecular function)
GO:0030527 - structural constituent of chromatin (molecular function)
InterPro domainsIPR009071 - High mobility group box domain
IPR031061 - High mobility group protein HMGB, plant
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022140698.1 high mobility group B protein 3-like [Momordica charantia]3.29e-7789.8Show/hide
Query:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK
        MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA               EKAPYAEKALSRK
Subjt:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK

Query:  TEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASSSS
        TEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASSSS
Subjt:  TEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASSSS

XP_022947100.1 high mobility group B protein 3-like [Cucurbita moschata]6.74e-5973.83Show/hide
Query:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK
        MRA +NAV+  KKPNAEMLK+RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA               EKAPYAEK+L RK
Subjt:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK

Query:  TEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS
         EY IALE YKK LNC   A+AE  M TESQKSTS+V DD +QEASSSS
Subjt:  TEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS

XP_022971125.1 high mobility group B protein 3-like [Cucurbita maxima]6.74e-5973.15Show/hide
Query:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK
        MRA +NAV+  KKPNAEMLK+RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA               EKAPYAEK+L RK
Subjt:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK

Query:  TEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS
         EY IALE YKK LNC   A+AE  + TESQKSTS+V DD +QEASSSS
Subjt:  TEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS

XP_023533147.1 high mobility group B protein 3-like [Cucurbita pepo subsp. pepo]9.57e-5973.15Show/hide
Query:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK
        MRA +NAV+  KKPN EMLK+RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA               EKAPYAEK+L RK
Subjt:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK

Query:  TEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS
         EY IALE YKK LNC   A+AE  M TESQKSTS+V DD +QEASSSS
Subjt:  TEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS

XP_038902242.1 high mobility group B protein 1-like [Benincasa hispida]2.47e-6175.17Show/hide
Query:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK
        MRA R+AV++RKK NA+MLKQRK EMKSTKS K+ KKDQNAPKRPATAFF+FMEEFRKTFKE+FPDAKAGP                EKAPYAEKAL RK
Subjt:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK

Query:  TEYVIALEAYKKTLNCCADAEAA--MPTESQKSTSEVHDDVDQEASSSS
         EY IALEAYKK LNCCADAEA   MPTESQKSTSEVHDD +QEASSSS
Subjt:  TEYVIALEAYKKTLNCCADAEAA--MPTESQKSTSEVHDDVDQEASSSS

TrEMBL top hitse value%identityAlignment
A0A1S3C1W5 HMG1/2-like protein isoform X16.31e-5165.61Show/hide
Query:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA-----------------------EKAPY
        MRA RNAV+  KKPNA+ LKQRKAEMKSTKS K   KDQNAPKRPATAFF+FMEEFR  FKE+FPDAKAGP                        EKAPY
Subjt:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA-----------------------EKAPY

Query:  AEKALSRKTEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS
        AEKAL RK EY IALEAYK   NC   A+ E  MPTESQKSTSEV+DD +QEASSSS
Subjt:  AEKALSRKTEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS

A0A1S3C2L9 high mobility group B protein 1-like isoform X27.33e-5369.8Show/hide
Query:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRK
        MRA RNAV+  KKPNA+ LKQRKAEMKSTKS K   KDQNAPKRPATAFF+FMEEFR  FKE+FPDAKAGP               AEKAPYAEKAL RK
Subjt:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRK

Query:  TEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS
         EY IALEAYK   NC   A+ E  MPTESQKSTSEV+DD +QEASSSS
Subjt:  TEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS

A0A6J1CIL2 high mobility group B protein 3-like1.59e-7789.8Show/hide
Query:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK
        MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA               EKAPYAEKALSRK
Subjt:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK

Query:  TEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASSSS
        TEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASSSS
Subjt:  TEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASSSS

A0A6J1G5W3 high mobility group B protein 3-like3.26e-5973.83Show/hide
Query:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK
        MRA +NAV+  KKPNAEMLK+RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA               EKAPYAEK+L RK
Subjt:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK

Query:  TEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS
         EY IALE YKK LNC   A+AE  M TESQKSTS+V DD +QEASSSS
Subjt:  TEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS

A0A6J1I4V5 high mobility group B protein 3-like3.26e-5973.15Show/hide
Query:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK
        MRA +NAV+  KKPNAEMLK+RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA               EKAPYAEK+L RK
Subjt:  MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRK

Query:  TEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS
         EY IALE YKK LNC   A+AE  + TESQKSTS+V DD +QEASSSS
Subjt:  TEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVHDDVDQEASSSS

SwissProt top hitse value%identityAlignment
O49595 High mobility group B protein 15.6e-1239.23Show/hide
Query:  IARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALE
        + ++K  AE     K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA                 AEKAPY EKA  RK EY   ++
Subjt:  IARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALE

Query:  AYKKTLNCCADAEAAMPTESQKSTSEVHDD
        AY K L   +D       ES+KS SE++D+
Subjt:  AYKKTLNCCADAEAAMPTESQKSTSEVHDD

O49596 High mobility group B protein 24.0e-1037.5Show/hide
Query:  ARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEA
        ++ +  +  L   K   K     K+  KD N PKRPA+AFF+FME+FR+TFK++ P  K+                 +EKAPY  KA  RK EY   ++A
Subjt:  ARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEA

Query:  YKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASS
        Y K L    +       ES KS SEV+D+ D E  S
Subjt:  YKKTLNCCADAEAAMPTESQKSTSEVHDDVDQEASS

P26585 HMG1/2-like protein4.8e-1142.98Show/hide
Query:  KDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPT-----ESQKS
        KD N PKRP +AFF+FMEEFRK F ++ P+ KA                 AEKAPY  K+  RK EY   + AY K        +A  PT     ES+KS
Subjt:  KDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPT-----ESQKS

Query:  TSEVHDDVDQEASS
         SEV+D+ D E  S
Subjt:  TSEVHDDVDQEASS

P40619 HMG1/2-like protein3.9e-1347.15Show/hide
Query:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPD-------AKAG--------PAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEA
        K +   TK  K   KD N PKRP +AFF+FME+FRKT+KEK P+        KAG         AEKAP+  KA  RK EY   L+AY K       A A
Subjt:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPD-------AKAG--------PAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEA

Query:  AMPTESQKSTSEVH-DDVDQEAS
        A   ES KS SEV+ DD DQ+ S
Subjt:  AMPTESQKSTSEVH-DDVDQEAS

P93047 High mobility group B protein 31.1e-1040.15Show/hide
Query:  KAEMKSTKSN---------KSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKT
        KAE +STK +         K   KD N PKRP++AFF+FME+FR T+KE+ P  K+                 +EKAPY  KA  RK EY   ++AY K 
Subjt:  KAEMKSTKSN---------KSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKT

Query:  LNCCADAEAAMPTESQKSTSEVHDDVDQEASS
        L    +       ES KS SEV+D+ D E  S
Subjt:  LNCCADAEAAMPTESQKSTSEVHDDVDQEASS

Arabidopsis top hitse value%identityAlignment
AT1G20696.1 high mobility group B37.5e-1240.15Show/hide
Query:  KAEMKSTKSN---------KSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKT
        KAE +STK +         K   KD N PKRP++AFF+FME+FR T+KE+ P  K+                 +EKAPY  KA  RK EY   ++AY K 
Subjt:  KAEMKSTKSN---------KSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKT

Query:  LNCCADAEAAMPTESQKSTSEVHDDVDQEASS
        L    +       ES KS SEV+D+ D E  S
Subjt:  LNCCADAEAAMPTESQKSTSEVHDDVDQEASS

AT3G51880.1 high mobility group B14.0e-1339.23Show/hide
Query:  IARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALE
        + ++K  AE     K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA                 AEKAPY EKA  RK EY   ++
Subjt:  IARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALE

Query:  AYKKTLNCCADAEAAMPTESQKSTSEVHDD
        AY K L   +D       ES+KS SE++D+
Subjt:  AYKKTLNCCADAEAAMPTESQKSTSEVHDD

AT3G51880.2 high mobility group B14.0e-1339.23Show/hide
Query:  IARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALE
        + ++K  AE     K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA                 AEKAPY EKA  RK EY   ++
Subjt:  IARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALE

Query:  AYKKTLNCCADAEAAMPTESQKSTSEVHDD
        AY K L   +D       ES+KS SE++D+
Subjt:  AYKKTLNCCADAEAAMPTESQKSTSEVHDD

AT3G51880.3 high mobility group B14.0e-1339.23Show/hide
Query:  IARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALE
        + ++K  AE     K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA                 AEKAPY EKA  RK EY   ++
Subjt:  IARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALE

Query:  AYKKTLNCCADAEAAMPTESQKSTSEVHDD
        AY K L   +D       ES+KS SE++D+
Subjt:  AYKKTLNCCADAEAAMPTESQKSTSEVHDD

AT3G51880.4 high mobility group B14.0e-1339.23Show/hide
Query:  IARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALE
        + ++K  AE     K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA                 AEKAPY EKA  RK EY   ++
Subjt:  IARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALE

Query:  AYKKTLNCCADAEAAMPTESQKSTSEVHDD
        AY K L   +D       ES+KS SE++D+
Subjt:  AYKKTLNCCADAEAAMPTESQKSTSEVHDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGCTCAGAGAAACGCCGTCATCGCTCGCAAGAAGCCTAATGCGGAGATGCTGAAGCAGAGAAAAGCCGAGATGAAATCTACGAAAAGCAATAAATCCATGAAGAA
AGATCAGAATGCACCAAAACGTCCAGCCACAGCTTTCTTCATTTTCATGGAGGAATTCAGAAAGACGTTCAAGGAGAAGTTTCCTGATGCAAAAGCTGGTCCAGCTGAAA
AAGCTCCTTACGCTGAAAAAGCTCTTAGTAGGAAGACAGAGTATGTGATAGCTCTCGAGGCATACAAGAAAACCCTCAATTGCTGTGCGGACGCTGAAGCTGCAATGCCA
ACAGAGTCACAGAAATCAACCTCTGAGGTCCATGATGATGTAGATCAGGAAGCTAGCTCTAGCTCTTAG
mRNA sequenceShow/hide mRNA sequence
CTTTCTCTTCGCGTATCGCTATCGCCTAATTCTAGAGAACCACCATGAGAGCTCAGAGAAACGCCGTCATCGCTCGCAAGAAGCCTAATGCGGAGATGCTGAAGCAGAGA
AAAGCCGAGATGAAATCTACGAAAAGCAATAAATCCATGAAGAAAGATCAGAATGCACCAAAACGTCCAGCCACAGCTTTCTTCATTTTCATGGAGGAATTCAGAAAGAC
GTTCAAGGAGAAGTTTCCTGATGCAAAAGCTGGTCCAGCTGAAAAAGCTCCTTACGCTGAAAAAGCTCTTAGTAGGAAGACAGAGTATGTGATAGCTCTCGAGGCATACA
AGAAAACCCTCAATTGCTGTGCGGACGCTGAAGCTGCAATGCCAACAGAGTCACAGAAATCAACCTCTGAGGTCCATGATGATGTAGATCAGGAAGCTAGCTCTAGCTCT
TAGGTTGCAGGACTTCAGTGTCCTTGGAGGAGGGGTAACAGATCTCCATATATTTTGTTTTATAAAACTTGCATGGTTAAGGACGAGAGCTTGCAATAGCATATGGAGGA
TGAAATGCTTGACACTTGCATAACTCTAGCAATTTTAGGACAAAAGTTAGGAATTTCCTTGGATATATATTTGTATCCTACGTACTTCTGCTCTGGTGTGGTGCACTAAA
GTCTCGTTTTTCTTGAGATTATCATCTGGTTAACAAGTGTTGCATGCTTTGAATTCCGACTTAAATTTCATATATACATTTGGAAAAATTGGAGGAAACGTGTGGAAGAA
ATTTAGAAAATACAGGGATTTGAAACTTGAAAAAGTTCTTCAAAATTATCGTTC
Protein sequenceShow/hide protein sequence
MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMP
TESQKSTSEVHDDVDQEASSSS