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MC02g0947 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC02g0947
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionSANT domain-containing protein
Genome locationMC02:7560032..7560259
RNA-Seq ExpressionMC02g0947
SyntenyMC02g0947
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008460938.1 PREDICTED: protein RADIALIS-like 2 [Cucumis melo]5.04e-3882.89Show/hide
Query:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGG-KTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSS
        +S SWTPNQNKAFERALAVFDKDTPDRW NVANAVGG KT DEVKRHFD LVEDVKHIESGR+PFP YT++++ SS
Subjt:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGG-KTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSS

XP_011037522.1 PREDICTED: protein RADIALIS-like 2 [Populus euphratica]5.27e-3885.51Show/hide
Query:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTAT
        SGSWT  QNKAFERALAV+DKDTPDRWHNVA AVGGKTA+EVKRH++LLVEDVKHIESGR+PFPNY  T
Subjt:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTAT

XP_022146256.1 protein RADIALIS-like 2 [Momordica charantia]6.71e-50100Show/hide
Query:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN
        SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN
Subjt:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN

XP_030450168.1 protein RADIALIS-like 1 isoform X4 [Syzygium oleosum]4.82e-3878.67Show/hide
Query:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN
        S SWT  QNKAFE+ALAV+DKDTPDRWHNVA AVGGKTA+EVKRH++LLVEDVKHIESG++PFPNY  T  G+SN
Subjt:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN

XP_038902123.1 protein RADIALIS-like 2 [Benincasa hispida]1.27e-4188.16Show/hide
Query:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGG-KTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN
        SGSWTPNQNKAFERALAVFDKDTPDRW NVANAVGG KTADEVKRHFDLLVEDVKHIESGR+PFPNYT+T+T +++
Subjt:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGG-KTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN

TrEMBL top hitse value%identityAlignment
A0A059AND9 SANT domain-containing protein6.70e-3878.67Show/hide
Query:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN
        S SWT  QNKAFE ALAV+DKDTPDRWHNVA AVGGKTA+EVKRH++LLVEDVKHIESGR+PFPNY  T  G+ N
Subjt:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN

A0A1S3CDK8 protein RADIALIS-like 22.44e-3882.89Show/hide
Query:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGG-KTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSS
        +S SWTPNQNKAFERALAVFDKDTPDRW NVANAVGG KT DEVKRHFD LVEDVKHIESGR+PFP YT++++ SS
Subjt:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGG-KTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSS

A0A2J6MJ33 SANT domain-containing protein4.45e-3880.56Show/hide
Query:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTG
        SGSWT  QNKAFE+ALAVFDKDTPDRWHNVA AVGGKTA+EVK+H+++LVEDVKHIE+GR+PFPNY  TT G
Subjt:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTG

A0A6J1CYR5 protein RADIALIS-like 23.25e-50100Show/hide
Query:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN
        SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN
Subjt:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN

A0A6J1L657 protein RADIALIS-like 13.32e-3881.08Show/hide
Query:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSS
        S SW+PNQNKAFERALA+FDKDTPDRW NVA AVG KTADEVKRHF+LLVEDVKHIESG +PFPNYT++++ SS
Subjt:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSS

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.1e-2364.47Show/hide
Query:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN
        SSGSWT  QNKAFE+ALA +D+DTP+RW NVA  VGGKT +EVKRH++LLV+D+  IE+G +PFPNY  T+ G +N
Subjt:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN

Q1A173 Protein RADIALIS-like 63.7e-2467.57Show/hide
Query:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGS
        S   WT +QNK FERALAV+DKDTPDRWHNVA AVGGKT +EVKRH+D+LVED+ +IE+GR+P PNY    + S
Subjt:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGS

Q58FS3 Transcription factor RADIALIS3.1e-2365.71Show/hide
Query:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTAT
        S   W+  +NKAFERALAV+DKDTPDRW NVA AV G+T +EVK+H+++LVED+K+IESG++PFPNY  T
Subjt:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTAT

Q6NNN0 Protein RADIALIS-like 32.4e-2370.15Show/hide
Query:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNY
        SS SWT  +NK FERALA +D+DTPDRWHNVA AVGGK+A+EV+RH++LL+ DV  IESGR P PNY
Subjt:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNY

Q9SIJ5 Protein RADIALIS-like 23.9e-2672Show/hide
Query:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN
        SGSWT  QNKAFERALAV+D+DTPDRWHNVA AVGGKT +E KR +DLLV D++ IE+G +PFP+Y  TTTG+SN
Subjt:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 58.4e-2463.16Show/hide
Query:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN
        SS SWT  QNK FERALAV+DKDTPDRW NVA AVG K+A+EVKRH+D+LVED+ +IE   +P P Y     GS +
Subjt:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN

AT1G75250.1 RAD-like 62.6e-2567.57Show/hide
Query:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGS
        S   WT +QNK FERALAV+DKDTPDRWHNVA AVGGKT +EVKRH+D+LVED+ +IE+GR+P PNY    + S
Subjt:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGS

AT1G75250.2 RAD-like 62.6e-2567.57Show/hide
Query:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGS
        S   WT +QNK FERALAV+DKDTPDRWHNVA AVGGKT +EVKRH+D+LVED+ +IE+GR+P PNY    + S
Subjt:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGS

AT2G21650.1 Homeodomain-like superfamily protein2.8e-2772Show/hide
Query:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN
        SGSWT  QNKAFERALAV+D+DTPDRWHNVA AVGGKT +E KR +DLLV D++ IE+G +PFP+Y  TTTG+SN
Subjt:  SGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN

AT4G39250.1 RAD-like 17.6e-2564.47Show/hide
Query:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN
        SSGSWT  QNKAFE+ALA +D+DTP+RW NVA  VGGKT +EVKRH++LLV+D+  IE+G +PFPNY  T+ G +N
Subjt:  SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTTCTGGCTCATGGACTCCAAACCAAAACAAGGCCTTCGAAAGGGCCTTGGCTGTCTTTGACAAGGACACCCCTGATCGCTGGCACAATGTCGCCAACGCCGTCGGCGG
CAAGACCGCCGACGAAGTCAAGAGGCATTTCGACCTTCTCGTCGAAGATGTCAAGCACATCGAATCCGGCCGCATTCCCTTCCCTAATTACACCGCCACCACCACCGGAT
CCTCCAAT
mRNA sequenceShow/hide mRNA sequence
TCTTCTGGCTCATGGACTCCAAACCAAAACAAGGCCTTCGAAAGGGCCTTGGCTGTCTTTGACAAGGACACCCCTGATCGCTGGCACAATGTCGCCAACGCCGTCGGCGG
CAAGACCGCCGACGAAGTCAAGAGGCATTTCGACCTTCTCGTCGAAGATGTCAAGCACATCGAATCCGGCCGCATTCCCTTCCCTAATTACACCGCCACCACCACCGGAT
CCTCCAAT
Protein sequenceShow/hide protein sequence
SSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAVGGKTADEVKRHFDLLVEDVKHIESGRIPFPNYTATTTGSSN