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MC02g1230 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC02g1230
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D1
Genome locationMC02:11208945..11209106
RNA-Seq ExpressionMC02g1230
SyntenyMC02g1230
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0000243 - commitment complex (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0034715 - pICln-Sm protein complex (cellular component)
GO:0034719 - SMN-Sm protein complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027141 - Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFP97834.1 small nuclear ribonucleoprotein sm d1 [Phtheirospermum japonicum]2.59e-1264.81Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
MBA0795697.1 hypothetical protein [Gossypium harknessii]3.34e-1262.96Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        + RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
XP_011079832.1 small nuclear ribonucleoprotein Sm D1-like isoform X1 [Sesamum indicum]3.22e-1264.81Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
XP_011082549.1 small nuclear ribonucleoprotein Sm D1 [Sesamum indicum]3.22e-1264.81Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
XP_022963993.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata]4.56e-1264.81Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
TrEMBL top hitse value%identityAlignment
A0A6I9T6Z3 Small nuclear ribonucleoprotein Sm D11.56e-1264.81Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
A0A6I9TCF6 Small nuclear ribonucleoprotein Sm D11.56e-1264.81Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
A0A6J1DVC4 Small nuclear ribonucleoprotein Sm D12.21e-1264.81Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
A0A6J1HWZ0 Small nuclear ribonucleoprotein Sm D12.21e-1264.81Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
A0A7J9GDP3 Sm domain-containing protein1.62e-1262.96Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        + RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  MD
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
SwissProt top hitse value%identityAlignment
O42661 Small nuclear ribonucleoprotein Sm D11.3e-0763.41Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCI
        L RFLMKL NETVSIELKNGT+VHGTIT + +  N ++  +
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCI
P62314 Small nuclear ribonucleoprotein Sm D12.9e-0760Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFL
        L RFLMKL++ETV+IELKNGT VHGTITG+ +S N ++  +   L
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFL
Q3ZC10 Small nuclear ribonucleoprotein Sm D12.9e-0760Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFL
        L RFLMKL++ETV+IELKNGT VHGTITG+ +S N ++  +   L
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFL
Q9SSF1 Small nuclear ribonucleoprotein SmD1a4.8e-1062.96Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  +D
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
Q9SY09 Small nuclear ribonucleoprotein SmD1b4.8e-1061.11Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGT+VHGTITG+ +S N ++  +   L   NP  +D
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
Arabidopsis top hitse value%identityAlignment
AT3G07590.1 Small nuclear ribonucleoprotein family protein3.4e-1162.96Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  +D
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
AT3G07590.2 Small nuclear ribonucleoprotein family protein3.4e-1162.96Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGTVVHGTITG+ +S N ++  +   L   NP  +D
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
AT4G02840.1 Small nuclear ribonucleoprotein family protein3.4e-1161.11Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGT+VHGTITG+ +S N ++  +   L   NP  +D
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD
AT4G02840.2 Small nuclear ribonucleoprotein family protein9.3e-0951.56Show/hide
Query:  LCRFLMKLNNETVSIELKNGTVVHGTIT----------GLHLSFNHNMLCINTFLILLNPRIMD
        L RFLMKLNNETVSIELKNGT+VHGTIT          G+ +S N ++  +   L   NP  +D
Subjt:  LCRFLMKLNNETVSIELKNGTVVHGTIT----------GLHLSFNHNMLCINTFLILLNPRIMD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGTGCAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACCGTTGTCCATGGCACTATCACAGGTCTCCATCTCTCTTTCAATCACAA
CATGCTTTGCATAAACACTTTCTTGATCCTGTTAAACCCTAGAATTATGGAC
mRNA sequenceShow/hide mRNA sequence
CTGTGCAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACCGTTGTCCATGGCACTATCACAGGTCTCCATCTCTCTTTCAATCACAA
CATGCTTTGCATAAACACTTTCTTGATCCTGTTAAACCCTAGAATTATGGAC
Protein sequenceShow/hide protein sequence
LCRFLMKLNNETVSIELKNGTVVHGTITGLHLSFNHNMLCINTFLILLNPRIMD