CuGenDBv2

Gene ID	MC02g1277
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Protein Ycf2
Genome location	MC02:12300419..12300605
RNA-Seq Expression	MC02g1277
Synteny	MC02g1277
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ASY97525.1 Ycf2 [Cucumis sativus var. hardwickii]

4.34e-22

72.86

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN
        GSVVQDLWSLSG DEKN ITSY LVENDS LVH +LEVEG        EK+CSRFDND+VTLLLRP+  N
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN

KAF3656894.1 hypothetical protein FXO38_13932 [Capsicum annuum]

9.80e-23

68.57

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN
        GS+VQDLWSLSG D KN+ITSY LVENDS LVH +LEVEG        EK+CS+FDN++VTLLLRPK  N
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN

PHT92788.1 hypothetical protein T459_00670 [Capsicum annuum]

2.97e-23

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN
        GS+VQDLWSLSG DEKN ITSY LVENDS LVH +LEVEG        EK+CS+FDND+VTLLLRP+  N
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN

Q2QD30.1 RecName: Full=Protein Ycf2 [Cucumis sativus]

4.34e-22

72.86

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN
        GSVVQDLWSLSG DEKN ITSY LVENDS LVH +LEVEG        EK+CSRFDND+VTLLLRP+  N
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN

XP_033511071.1 protein Ycf2-like [Nicotiana tomentosiformis]

2.56e-22

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN
        GSV QDLWSLSG DEKN ITSY LVENDS LVH +LEVEG        EK+CS+FDND+VTLLLRP+  N
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LK99 ATPase_AAA_core domain-containing protein

1.31e-22

72.86

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN
        GSVVQDLWSLSG DEKN ITSY LVENDS LVH +LEVEG        EK+CSRFDND+VTLLLRP+  N
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN

A0A218KGA5 Protein Ycf2

2.10e-22

72.86

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN
        GSVVQDLWSLSG DEKN ITSY LVENDS LVH +LEVEG        EK+CSRFDND+VTLLLRP+  N
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN

A0A286SBA1 Protein Ycf2

2.10e-22

72.86

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN
        GSVVQDLWSLSG DEKN ITSY LVENDS LVH +LEVEG        EK+CSRFDND+VTLLLRP+  N
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN

A0A2G3AF29 Uncharacterized protein

1.44e-23

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN
        GS+VQDLWSLSG DEKN ITSY LVENDS LVH +LEVEG        EK+CS+FDND+VTLLLRP+  N
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN

A0A5B7C563 Uncharacterized protein

1.64e-22

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN
        GSV QDLWSL G DEKN ITSY LVENDS LVH +LEVEG        EK+CS+FDND+VTLLLRP+S N
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN

SwissProt top hits

e value

%identity

Alignment

A7Y3J6 Protein Ycf2

3.8e-19

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN
        GSV QDLWSL G DEKN ITSY LVENDS LVH +LEVEG        EKNCS+FDND+VTLLLRP+  N
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN

Q2QD30 Protein Ycf2

4.5e-20

72.86

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN
        GSVVQDLWSLSG DEKN ITSY LVENDS LVH +LEVEG        EK+CSRFDND+VTLLLRP+  N
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN

Q3C1N4 Protein Ycf2

3.8e-19

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN
        GSV QDLWSLSG DEKN ITSY LVENDS LVH +LEVEG        EK+CS+FDND+VTLLLRP+  N
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN

Q8S8U1 Protein Ycf2 B

3.8e-19

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN
        GSV QDLWSLSG DEKN ITSY LVENDS LVH +LEVEG        EK+CS+FDND+VTLLLRP+  N
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN

Q8S8V2 Protein Ycf2 A

3.8e-19

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN
        GSV QDLWSLSG DEKN ITSY LVENDS LVH +LEVEG        EK+CS+FDND+VTLLLRP+  N
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLRPKSTN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

1.4e-16

64.62

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLR
        GSV QDLWSL   DEKN+ITSY  VENDS LVH +LEV+G        EK+CS+FDND+VTLL R
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLR

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

1.4e-16

64.62

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Query:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLR
        GSV QDLWSL   DEKN+ITSY  VENDS LVH +LEV+G        EK+CS+FDND+VTLL R
Subjt:  GSVVQDLWSLSGSDEKNKITSYXLVENDSALVHSILEVEG--------EKNCSRFDNDQVTLLLR

Sequences

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CDS sequence

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GGATCGGTCGTTCAAGACCTTTGGTCTCTATCCGGATCCGATGAAAAAAATAAGATCACTTCTTATTGACTCGTTGAAAATGATTCTGCTCTAGTTCATAGCATATTAGA
AGTAGAAGGCGAAAAAAATTGCAGTCGATTTGATAATGATCAAGTGACATTGCTTCTTCGGCCCAAGTCCACGAAT

mRNA sequence

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GGATCGGTCGTTCAAGACCTTTGGTCTCTATCCGGATCCGATGAAAAAAATAAGATCACTTCTTATTGACTCGTTGAAAATGATTCTGCTCTAGTTCATAGCATATTAGA
AGTAGAAGGCGAAAAAAATTGCAGTCGATTTGATAATGATCAAGTGACATTGCTTCTTCGGCCCAAGTCCACGAAT

Protein sequence

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GSVVQDLWSLSGSDEKNKITSYULVENDSALVHSILEVEGEKNCSRFDNDQVTLLLRPKSTN

MC02g1277 (gene) of Bitter gourd (Dali-11) v1 genome