CuGenDBv2

Gene ID	MC02g1460
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein L16, chloroplastic
Genome location	MC02:20849064..20849276
RNA-Seq Expression	MC02g1460
Synteny	MC02g1460
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0000049 - tRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000114 - Ribosomal protein L16 IPR016180 - Ribosomal protein L10e/L16 IPR020798 - Ribosomal protein L16, conserved site IPR036920 - Ribosomal protein L10e/L16 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QDK99983.1 ribosomal protein L16 [Siraitia grosvenorii]

2.80e-36

87.32

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Query:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        + ARRGGKIWV IFPDKPV LRP E RMGSGKGSP YWVAVVKPGRILYEMGGVAENIARKA+SI ASKMP
Subjt:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

WP_110364088.1 50S ribosomal protein L16, partial [Marinifilum breve]

1.57e-36

85.92

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Query:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        + ARRGGKIWV IFPDKPV +RP E RMGSGKGSP YWVAVVKPGRILYEMGGVAENIARKA+SI ASKMP
Subjt:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

YP_009456098.1 ribosomal protein L16 [Momordica charantia]

1.95e-40

92.96

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Query:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        + ARRGGKIWV IFPDKPV LRPPE RMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
Subjt:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

YP_009674428.1 ribosomal protein L16 [Siraitia grosvenorii]

1.79e-36

87.32

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Query:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        + ARRGGKIWV IFPDKPV LRP E RMGSGKGSP YWVAVVKPGRILYEMGGVAENIARKA+SI ASKMP
Subjt:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

YP_009752195.1 ribosomal protein L16 [Linnaeosicyos amara]

2.03e-36

87.32

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Query:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        + ARRGGKIWV IFPDKPV LRP E RMGSGKGSP YWVAVVKPGRILYEMGGVAENIARKA+SI ASKMP
Subjt:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

TrEMBL top hits

e value

%identity

Alignment

A0A2I6C017 50S ribosomal protein L16, chloroplastic

9.46e-41

92.96

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Query:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        + ARRGGKIWV IFPDKPV LRPPE RMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
Subjt:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

A0A2V3ZKQ4 50S ribosomal protein L16 (Fragment)

7.59e-37

85.92

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Query:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        + ARRGGKIWV IFPDKPV +RP E RMGSGKGSP YWVAVVKPGRILYEMGGVAENIARKA+SI ASKMP
Subjt:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

A0A514YKW7 50S ribosomal protein L16, chloroplastic

8.66e-37

87.32

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Query:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        + ARRGGKIWV IFPDKPV LRP E RMGSGKGSP YWVAVVKPGRILYEMGGVAENIARKA+SI ASKMP
Subjt:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

A0A6C0UEP4 50S ribosomal protein L16, chloroplastic

8.66e-37

87.32

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Query:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        + ARRGGKIWV IFPDKPV LRP E RMGSGKGSP YWVAVVKPGRILYEMGGVAENIARKA+SI ASKMP
Subjt:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

A0A6H0EUT5 50S ribosomal protein L16, chloroplastic

9.85e-37

87.32

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Query:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        + ARRGGKIWV IFPDKPV LRP E RMGSGKGSP YWVAVVKPGRILYEMGGVAENIARKA+SI ASKMP
Subjt:  QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

SwissProt top hits

e value

%identity

Alignment

B1NWI7 50S ribosomal protein L16, chloroplastic

9.4e-30

89.86

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Query:  ARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        ARRGGKIWV IFPDKPV LRP E RMGSGKGSP YWVAVVKPGRILYEMGGVAENIARKA+SI ASKMP
Subjt:  ARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

Q0ZIY1 50S ribosomal protein L16, chloroplastic

7.9e-29

88.24

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Query:  RRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        RRGGKIWV IFPDKPV +RP E RMGSGKGSP YWVAVVKPGRILYEMGGVAENIARKA+SI ASKMP
Subjt:  RRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

Q49KW1 50S ribosomal protein L16, chloroplastic

7.9e-29

88.24

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Query:  RRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        RRGGKIWV IFPDKPV +RP E RMGSGKGSP YWVAVVKPGRILYEMGGVAENIARKA+SI ASKMP
Subjt:  RRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

Q4VZN1 50S ribosomal protein L16, chloroplastic

4.6e-29

88.41

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Query:  ARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        ARRGGKIWV IFPDKPV LRP E RMGSGKGSP YWVAVVKPGRILYEM GVAENIARKA+SI ASKMP
Subjt:  ARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

Q8S8V6 50S ribosomal protein L16, chloroplastic

1.0e-28

85.51

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Query:  ARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        ARRGGKIWV IFPDKPV LRP E RMGSGKGSP YWVAVVKPGRILYEMGGV ENIAR+A+S+ ASKMP
Subjt:  ARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

Arabidopsis top hits

e value

%identity

Alignment

AT2G28830.1 PLANT U-BOX 12

4.3e-22

67.16

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Query:  RGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        RG  + V IF DKPV +RPPE RMG GKG+P +WVAVVKPG+I+YEMGGV+E +AR+A+SI ASK+P
Subjt:  RGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

ATCG00790.1 ribosomal protein L16

4.8e-29

85.29

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Query:  RRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP
        RRGGKIWV IFPDKPV +RP E RMGSGKGSP YWVAVVKPG+ILYEMGGV ENIARKA+SI ASKMP
Subjt:  RRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

ATMG00080.1 ribosomal protein L16

4.8e-13

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Query:  RRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASK
        RR GKIWV +F D P+  +P E RMG GKG+P  W+A V  G+I +EM GV+   AR+A ++ A K
Subjt:  RRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASK

Sequences

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CDS sequence

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CAAACNGCACGACGCGGCGGAAAAATATGGGTACCTATATTTCCAGACAAACCCGTTATACTAAGACCTCCAGAAGCACGTATGGGTTCAGGCAAAGGATCCCCT
GGATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATGAAATGGGTGGAGTAGCAGAAAATATAGCCAGAAAGGCTATGTCAATAGGGGCGTCTAAAATG
CCT

mRNA sequence

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Protein sequence

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QXARRGGKIWVPIFPDKPVILRPPEARMGSGKGSPGYWVAVVKPGRILYEMGGVAENIARKAMSIGASKMP

MC02g1460 (gene) of Bitter gourd (Dali-11) v1 genome