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MC03g0006 (gene) of Bitter gourd (Dali-11) v1 genome

Gene IDMC03g0006
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description50S ribosomal protein L6, putative
Genome locationMC03:7101..7882
RNA-Seq ExpressionMC03g0006
SyntenyMC03g0006
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000702 - Ribosomal protein L6
IPR002358 - Ribosomal protein L6, conserved site
IPR019906 - Ribosomal protein L6, bacterial-type
IPR020040 - Ribosomal protein L6, alpha-beta domain
IPR036789 - Ribosomal protein L6, alpha-beta domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
NP_001235881.2 60S ribosomal protein L6 [Glycine max]4.77e-6493.14Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKN+V+CCTGIDKQRVHQFAA VR+CKPPEVYKGKGIMY++EV+KKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK

Query:  SK
        SK
Subjt:  SK

PON38569.1 Ribosomal protein [Parasponia andersonii]2.36e-6495.1Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK
        MEA+FFRFLKIVGVGYKARAE+AGRLLYLKLGYSHEVELTVPPAVRVFCFKN+VVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYI+EV+KKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK

Query:  SK
        SK
Subjt:  SK

XP_004143514.1 uncharacterized protein LOC101220210 [Cucumis sativus]8.24e-6595.1Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKN+VVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMY++EV+K+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK

Query:  SK
        SK
Subjt:  SK

XP_022158420.1 uncharacterized protein LOC111024915 [Momordica charantia]8.56e-67100Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK

Query:  SK
        SK
Subjt:  SK

XP_022950399.1 uncharacterized protein LOC111453510 [Cucurbita moschata]2.02e-6597.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKN+VVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYI+EV+KKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK

Query:  SK
        SK
Subjt:  SK

TrEMBL top hitse value%identityAlignment
A0A0A0KJ40 Ribosomal_L6 domain-containing protein3.99e-6595.1Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKN+VVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMY++EV+K+KQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A2P5APW3 Ribosomal protein1.14e-6495.1Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK
        MEA+FFRFLKIVGVGYKARAE+AGRLLYLKLGYSHEVELTVPPAVRVFCFKN+VVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYI+EV+KKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1E0V2 uncharacterized protein LOC1110249154.14e-67100Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1GFP3 uncharacterized protein LOC1114535109.79e-6697.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKN+VVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYI+EV+KKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK

Query:  SK
        SK
Subjt:  SK

A0A6J1IQJ4 uncharacterized protein LOC1114785189.79e-6697.06Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK
        MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKN+VVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYI+EV+KKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK

Query:  SK
        SK
Subjt:  SK

SwissProt top hitse value%identityAlignment
B2IK77 50S ribosomal protein L63.1e-1848.96Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK
        F R L+I GVGYKA  +  G+ L L LGYSH++   +P  + +   K + V  TGIDKQRV Q AA +R+ +PPE YKGKG+ Y  E + +K+GKK
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK

P26861 60S ribosomal protein L6, mitochondrial1.6e-3569Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK
        MEAKFF FL+I+GVGYKA   A G +LYLKLG+SHE+ L V P+VRVFC K +++CCTG+D Q+V QFAA V+SCKPPEVYKGKGI Y NE++ KKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK

P82193 50S ribosomal protein L6, chloroplastic6.9e-1847.96Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKKSK
        F + L++VGVGY+A  E  G+ L L LG+SH V + +P  ++V   +N+ V  +G DK  V QFAA +RS +PPE YKGKG+ Y++EVV++K+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKKSK

Q2JQN4 50S ribosomal protein L65.3e-1847.96Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKKSK
        F R L++VGVGY  RA   G  L L +GYSH VE+  PP +++    N+V+  +GIDK+ V   AA +R+ +PPE YKGKGI Y+ E V++K GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKKSK

Q8EUC8 50S ribosomal protein L69.0e-1851.06Show/hide
Query:  LKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKKSK
        LKIVGVGYKA     G  + L LGYSH ++L +P  + V C + + V  TG DK  V QFAA +RS +PPE YKGKG+ Y NEV+ +K GK ++
Subjt:  LKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKKSK

Arabidopsis top hitse value%identityAlignment
AT1G05190.1 Ribosomal protein L6 family7.1e-1843.88Show/hide
Query:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKKSK
        F + L +VGVGY+A  +  G+ L L LG+SH V++ +P +++V   +N+ +  +G DK  + QFAA VR  +PPE YKGKG+ Y +E+V++K+GK  K
Subjt:  FFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKKSK

AT2G18400.1 ribosomal protein L6 family protein2.0e-4992.16Show/hide
Query:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK
        MEAKFFRFLKIVGVGYKARAE AGR LYLKLGYSHEVEL VPPAVRVFCFKN+VVCCTGIDKQRVHQFAA VRSCKPPE YKGKGIMY +EVVKKKQGKK
Subjt:  MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKK

Query:  SK
        SK
Subjt:  SK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCCAAATTTTTTCGCTTCTTGAAGATTGTGGGAGTTGGTTACAAAGCCAGAGCAGAGGCAGCAGGACGTCTCTTGTATCTTAAACTGGGATACAGCCATGAAGT
TGAATTAACTGTTCCTCCAGCCGTTCGAGTCTTCTGCTTCAAAAACAGTGTAGTCTGCTGCACGGGGATTGACAAACAAAGGGTACATCAATTTGCTGCTGCAGTTCGTA
GCTGTAAACCGCCAGAAGTATACAAAGGCAAGGGCATAATGTACATCAACGAGGTCGTTAAAAAGAAACAAGGAAAGAAGTCCAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCCAAATTTTTTCGCTTCTTGAAGATTGTGGGAGTTGGTTACAAAGCCAGAGCAGAGGCAGCAGGACGTCTCTTGTATCTTAAACTGGGATACAGCCATGAAGT
TGAATTAACTGTTCCTCCAGCCGTTCGAGTCTTCTGCTTCAAAAACAGTGTAGTCTGCTGCACGGGGATTGACAAACAAAGGGTACATCAATTTGCTGCTGCAGTTCGTA
GCTGTAAACCGCCAGAAGTATACAAAGGCAAGGGCATAATGTACATCAACGAGGTCGTTAAAAAGAAACAAGGAAAGAAGTCCAAGTAGTTTTTGCAAAATGCCTCAAAT
CGATCTCTATTCAGACACAAAGTGGCCTCAGTCAAGAATAATTGGGTTTGCTGTATGCATATTTAGAGTATTCCATAGATTAAGCCGTGGGACTGAAATTTTGGTAGCTT
CATGCTAATTAAAGGTTGAGGGTTGACAATTTTGGTAGCTTCATGCTAATTAAAGGTTGAGGGTTGACTCATGCCTGTGTTTCGACTTGTAATGCAACAATCAGCTTGCC
TGTTTCATTTTTAATCCCTCTTTGCTCTGGAAGAAGTTTTAATCGGTTGATTATTTGACAAGTTCCCTTCCTGTTTAGAAGTTAAGGGATTGACTGAAGGTTGCCCGATG
TACTTTACAGGACATTTGCATTATTTATCATAATGATACTTCATTAAATAGGTTAAAGTACAGTTGCTATACTTTTATTTAGTCCCTAACTTTAGTATATAATAATTTAG
TCGGTTCGTTCA
Protein sequenceShow/hide protein sequence
MEAKFFRFLKIVGVGYKARAEAAGRLLYLKLGYSHEVELTVPPAVRVFCFKNSVVCCTGIDKQRVHQFAAAVRSCKPPEVYKGKGIMYINEVVKKKQGKKSK