CuGenDBv2

Gene ID	MC03g0034
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Paired amphipathic helix protein Sin3-like 4
Genome location	MC03:440417..440746
RNA-Seq Expression	MC03g0034
Synteny	MC03g0034
Gene Ontology terms	GO:0000122 - negative regulation of transcription by RNA polymerase II (biological process) GO:0016575 - histone deacetylation (biological process) GO:0000118 - histone deacetylase complex (cellular component) GO:0000785 - chromatin (cellular component) GO:0003714 - transcription corepressor activity (molecular function)
InterPro domains	IPR013194 - Histone deacetylase interacting domain IPR039774 - Transcriptional regulatory protein Sin3-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG2587451.1 hypothetical protein PVAP13_5NG150362 [Panicum virgatum]

6.18e-48

75.45

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+RFELDMLLESVN+A KHVEEL++KM   DN+V+ E P+RI++HL+ LNLRCIERLYGDHG+DV+DVLRKN++VALPVIL RLKQKQEEW+
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DFN+VW
Subjt:  QCRDDFNQVW

PKI47217.1 hypothetical protein CRG98_032354 [Punica granatum]

2.42e-50

72.73

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+RFELDMLLESVN A K VEELL+K+NN+   ++ E P+ IE+HL+ LNLRCIER+YGDHG+DV+DVLRKN+ +ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DFN+VW
Subjt:  QCRDDFNQVW

XP_022151191.1 paired amphipathic helix protein Sin3-like 4 isoform X1 [Momordica charantia]

3.34e-48

77.27

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+RFELDMLLESVN   K VEELLDK+NNN   ++A+CP+ IEDHL+ LNLRCIERLYGDHG+DV+DVLRKNS +ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DFN+VW
Subjt:  QCRDDFNQVW

XP_022151192.1 paired amphipathic helix protein Sin3-like 4 isoform X2 [Momordica charantia]

3.33e-48

77.27

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+RFELDMLLESVN   K VEELLDK+NNN   ++A+CP+ IEDHL+ LNLRCIERLYGDHG+DV+DVLRKNS +ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DFN+VW
Subjt:  QCRDDFNQVW

XP_022151193.1 paired amphipathic helix protein Sin3-like 4 isoform X3 [Momordica charantia]

3.33e-48

77.27

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+RFELDMLLESVN   K VEELLDK+NNN   ++A+CP+ IEDHL+ LNLRCIERLYGDHG+DV+DVLRKNS +ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DFN+VW
Subjt:  QCRDDFNQVW

TrEMBL top hits

e value

%identity

Alignment

A0A287JVP3 HDAC_interact domain-containing protein

1.78e-48

72.73

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+RFELDMLLESVN+A K VEEL++KM   DN+V+ E P+RI++HL+ LNLRCIERLYGDHG+DV+DVLR+N++VALPVIL+RLKQKQ+EW+
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DFN+VW
Subjt:  QCRDDFNQVW

A0A2I0IT84 HDAC_interact domain-containing protein

1.17e-50

72.73

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+RFELDMLLESVN A K VEELL+K+NN+   ++ E P+ IE+HL+ LNLRCIER+YGDHG+DV+DVLRKN+ +ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DFN+VW
Subjt:  QCRDDFNQVW

A0A6J1DBI6 paired amphipathic helix protein Sin3-like 4 isoform X3

1.61e-48

77.27

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+RFELDMLLESVN   K VEELLDK+NNN   ++A+CP+ IEDHL+ LNLRCIERLYGDHG+DV+DVLRKNS +ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DFN+VW
Subjt:  QCRDDFNQVW

A0A6J1DCT7 paired amphipathic helix protein Sin3-like 4 isoform X2

1.61e-48

77.27

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+RFELDMLLESVN   K VEELLDK+NNN   ++A+CP+ IEDHL+ LNLRCIERLYGDHG+DV+DVLRKNS +ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DFN+VW
Subjt:  QCRDDFNQVW

A0A6J1DDV1 paired amphipathic helix protein Sin3-like 4 isoform X1

1.62e-48

77.27

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+RFELDMLLESVN   K VEELLDK+NNN   ++A+CP+ IEDHL+ LNLRCIERLYGDHG+DV+DVLRKNS +ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DFN+VW
Subjt:  QCRDDFNQVW

SwissProt top hits

e value

%identity

Alignment

O04539 Paired amphipathic helix protein Sin3-like 4

7.2e-37

68.18

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLF+ ED+RFELDMLLESV SA   VEELL K+N+N+  ++ + P+ IEDHL+ LNLRCIERLY DHG+DV+D+L+KN+ +ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR +FN+VW
Subjt:  QCRDDFNQVW

O48686 Paired amphipathic helix protein Sin3-like 3

1.1e-40

71.82

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLF+ ED+RFELDMLLESVNS  KHVEELL K+N+N+  ++   P+R+EDHL+ LNLRCIERLYGDHG+DV+DVL+KN ++ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DF++VW
Subjt:  QCRDDFNQVW

Q9LFQ3 Paired amphipathic helix protein Sin3-like 2

1.1e-34

68.18

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+RFELDMLLESV SAAK  EELL+ +   D  +  E   RIEDH + LNLRCIERLYGDHG+DV D++RKN A ALPVIL RLKQKQ+EW 
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR+ FN VW
Subjt:  QCRDDFNQVW

Q9XIE1 Paired amphipathic helix protein Sin3-like 5

3.2e-37

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+RFELDMLLESV++A K VE LL+K+NN  N +  E P+ I +HLS LNLRCIERLYGD+G+DV+D L+KNS +ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DF +VW
Subjt:  QCRDDFNQVW

Q9XIK6 Paired amphipathic helix protein Sin3-like 6

5.7e-34

65.45

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+R+E+DMLL SV+SA K VE LL+KMNN  N +  +  + IE HLS +NLRCIERLYGD+G+DV+D+L+KN   ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +C  DF +VW
Subjt:  QCRDDFNQVW

Arabidopsis top hits

e value

%identity

Alignment

AT1G24190.1 SIN3-like 3

7.6e-42

71.82

Show/hide

Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLF+ ED+RFELDMLLESVNS  KHVEELL K+N+N+  ++   P+R+EDHL+ LNLRCIERLYGDHG+DV+DVL+KN ++ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DF++VW
Subjt:  QCRDDFNQVW

AT1G24190.2 SIN3-like 3

7.6e-42

71.82

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLF+ ED+RFELDMLLESVNS  KHVEELL K+N+N+  ++   P+R+EDHL+ LNLRCIERLYGDHG+DV+DVL+KN ++ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DF++VW
Subjt:  QCRDDFNQVW

AT1G59890.1 SIN3-like 5

2.3e-38

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+RFELDMLLESV++A K VE LL+K+NN  N +  E P+ I +HLS LNLRCIERLYGD+G+DV+D L+KNS +ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DF +VW
Subjt:  QCRDDFNQVW

AT1G59890.2 SIN3-like 5

2.3e-38

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+RFELDMLLESV++A K VE LL+K+NN  N +  E P+ I +HLS LNLRCIERLYGD+G+DV+D L+KNS +ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DF +VW
Subjt:  QCRDDFNQVW

AT1G59890.3 SIN3-like 5

2.3e-38

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Query:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA
        EESLFR ED+RFELDMLLESV++A K VE LL+K+NN  N +  E P+ I +HLS LNLRCIERLYGD+G+DV+D L+KNS +ALPVIL RLKQKQEEWA
Subjt:  EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWA

Query:  QCRDDFNQVW
        +CR DF +VW
Subjt:  QCRDDFNQVW

Sequences

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CDS sequence

Show/hide CDS sequence

GAGGAGAGCCTTTTCCGACGTGAGGACGAGAGATTTGAACTCGACATGCTGCTGGAGTCTGTCAACTCTGCTGCCAAGCATGTCGAGGAACTGCTCGACAAGATGAACAA
CAACGACAATGCGGTCAGAGCGGAATGTCCGGTCAGGATTGAGGATCACCTCAGTGTTCTGAATCTGAGGTGCATCGAACGGCTGTACGGTGATCATGGGGTTGATGTTG
TGGATGTGTTGAGGAAGAATTCGGCTGTGGCTCTGCCTGTTATTTTGGCCCGTTTGAAGCAGAAACAGGAAGAATGGGCACAGTGTCGTGATGATTTCAATCAAGTTTGG

mRNA sequence

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Protein sequence

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EESLFRREDERFELDMLLESVNSAAKHVEELLDKMNNNDNAVRAECPVRIEDHLSVLNLRCIERLYGDHGVDVVDVLRKNSAVALPVILARLKQKQEEWAQCRDDFNQVW

MC03g0034 (gene) of Bitter gourd (Dali-11) v1 genome