CuGenDBv2

Gene ID	MC03g0076
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	PHD finger-like domain-containing protein 5B
Genome location	MC03:1088939..1089524
RNA-Seq Expression	MC03g0076
Synteny	MC03g0076
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005686 - U2 snRNP (cellular component) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0016853 - isomerase activity (molecular function)
InterPro domains	IPR005345 - PHF5-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAF1868896.1 hypothetical protein Lal_00048175 [Lupinus albus]

4.81e-81

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

NP_001077473.1 PHF5-like protein [Arabidopsis thaliana]

4.92e-81

99.09

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

NP_001148557.1 PHD finger-like domain-containing protein 5A [Zea mays]

4.92e-81

99.09

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCV+CDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

NP_001235659.1 PHD finger-like domain-containing protein 5A-like [Glycine max]

3.46e-81

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

XP_022679553.1 PHD finger-like domain-containing protein 5B isoform X1 [Setaria italica]

5.87e-81

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3VFD8 PHD finger-like domain-containing protein 5B

1.68e-81

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

A0A1U7WEQ8 PHD finger-like domain-containing protein 5B

1.68e-81

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

A0A1U8I119 PHD finger-like domain-containing protein 5B

1.68e-81

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

A0A6J1I5N2 PHD finger-like domain-containing protein 5B

1.68e-81

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

C5XAZ5 Uncharacterized protein

1.68e-81

100

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

SwissProt top hits

e value

%identity

Alignment

P0DI19 PHD finger-like domain-containing protein 5A

1.1e-64

99.09

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

P83870 PHD finger-like domain-containing protein 5A

1.2e-60

91.82

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

P83871 PHD finger-like domain-containing protein 5A

1.2e-60

91.82

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

Q0WMV8 PHD finger-like domain-containing protein 5B

1.1e-64

99.09

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

Q7RTV0 PHD finger-like domain-containing protein 5A

1.2e-60

91.82

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLI CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

Arabidopsis top hits

e value

%identity

Alignment

AT1G07170.1 PHF5-like protein

7.6e-66

99.09

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

AT1G07170.2 PHF5-like protein

7.6e-66

99.09

Show/hide

Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

AT1G07170.3 PHF5-like protein

7.6e-66

99.09

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

AT2G30000.1 PHF5-like protein

7.6e-66

99.09

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Query:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
        MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY
Subjt:  MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFY

Query:  ERKKYGFKKR
        ERKKYGFKKR
Subjt:  ERKKYGFKKR

Sequences

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CDS sequence

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mRNA sequence

Show/hide mRNA sequence

ATGGCCAAGCATCATCCTGATTTGATTATGTGCCGCAAGCAGCCAGGAATTGCCATTGGCCGACTTTGTGAGAAGTGCGATGGAAAGTGTGTGATCTGCGATTCTTATGT
CCGCCCCTGCACGCTTGTGCGGGTATGTGACGAATGCAATTACGGGTCATTTCAAGGGCGGTGTGTCATCTGTGGAGGAGTAGGAATTTCAGACGCCTACTACTGCAAAG
AGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATCGTTAACTTAGGCAGTGCAAAAACAGACTTGTTCTACGAACGTAAGAAATATGGGTTCAAGAAACGA
TAAAGCAAAAACAATTATGTTCCTAGAATGGATCTTACTGTAATGTGATGGATTTCTGATTTCTAATCTCAAACTTGCGTAGTCATTGTATGTATATGTTATGTTGATGG
GTCAGAATGAGAGCAATCGTCCTTTTTCCTTAGTTCAACAACATTGTTTTGGTCGAGAATATATGTTAACCAGTTGAATTATGCTCACAGTTTGGTGCCGTGAGATTTGA
AAACTTTATCGATTGTATTGCGATGATATTTGAATT

Protein sequence

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MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

MC03g0076 (gene) of Bitter gourd (Dali-11) v1 genome