CuGenDBv2

Gene ID	MC03g0077
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Protein Ycf2
Genome location	MC03:1099520..1099871
RNA-Seq Expression	MC03g0077
Synteny	MC03g0077
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR008543 - Uncharacterised protein family Ycf2

Homology

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GenBank top hits

e value

%identity

Alignment

ABD16781.1 probable ATPase, partial [Eucalyptus cinerea]

7.82e-63

78.63

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLLLRP+PRNPLDM+QNGS SI   RFLYE++ESEFEE EGEGVLDPQQIEEDLFNHIVWA RIWRPWGFLF CIERPN LGF YWARS R KRIIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGT+QYQTRDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

AEK71428.1 hypothetical chloroplast RF2, partial [Anisophyllea fallax]

9.40e-62

78.63

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLLLRPEPRNPLDM+QNGS SI   RFLYEQ+ESEFEE  GEGVLDPQQIEEDLFNHIVWA RIWRPWGFLF CIERPN LGF YWAR  R K+IIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGTVQYQTRDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

BBN70089.1 hypothetical protein Prudu_1411S000300, partial [Prunus dulcis]

4.07e-61

78.63

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLLLRPEPRNPLDM+QNGS SI   RFLYEQ+ESEFEE  GEGVLDPQ+IEEDLFNHIVWA RIWRPWGFLF CIERPNELGF YW RS R KRIIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGT+QYQTRDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

QGA86663.1 hypothetical protein RF2, partial [Pachyelasma tessmannii]

3.10e-61

78.63

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLLLRPEPRNPL+MIQNGS SI   RFLYE++ESEFEE  GEGVLDPQQIEEDLFNHIVWA RIWRPWG LF CIERPNELGF YWARS R KRIIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGT+QYQTRDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

XP_038886513.1 protein Ycf2-like [Benincasa hispida]

1.18e-64

81.68

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLLLRPEPRNPLDMIQNGS SI   RFLYEQ+ESEFEE EGEGVLDPQQIEEDLFNHIVWA RIWRPWGFLF CIERPNELGF YWARS R KRIIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGTVQYQTRDRSSK+Q
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

TrEMBL top hits

e value

%identity

Alignment

A0A2N9I3E6 Uncharacterized protein

5.56e-62

80.15

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLLLRPEPRNPLDM+QNGS SI   RFLYEQ+ESEFEE E EGVLDPQQIEEDLFNHIVWA RIWRPWGFLF CIERPNELGF YWARS R KRIIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGTVQ QTRDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

A0A5H2XUC8 Uncharacterized protein (Fragment)

1.97e-61

78.63

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLLLRPEPRNPLDM+QNGS SI   RFLYEQ+ESEFEE  GEGVLDPQ+IEEDLFNHIVWA RIWRPWGFLF CIERPNELGF YW RS R KRIIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGT+QYQTRDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

A0A5Q0UYP9 Uncharacterized protein (Fragment)

1.50e-61

78.63

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLLLRPEPRNPL+MIQNGS SI   RFLYE++ESEFEE  GEGVLDPQQIEEDLFNHIVWA RIWRPWG LF CIERPNELGF YWARS R KRIIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGT+QYQTRDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

G0YCV1 Hypothetical chloroplast RF2 (Fragment)

4.55e-62

78.63

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLLLRPEPRNPLDM+QNGS SI   RFLYEQ+ESEFEE  GEGVLDPQQIEEDLFNHIVWA RIWRPWGFLF CIERPN LGF YWAR  R K+IIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGTVQYQTRDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

Q0H0U0 Probable ATPase (Fragment)

3.79e-63

78.63

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLLLRP+PRNPLDM+QNGS SI   RFLYE++ESEFEE EGEGVLDPQQIEEDLFNHIVWA RIWRPWGFLF CIERPN LGF YWARS R KRIIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGT+QYQTRDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

SwissProt top hits

e value

%identity

Alignment

B1A978 Protein Ycf2

1.9e-51

79.39

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLLLR EPRNPL M+QNGS SI   RFLYE++ESEFEE EGEGVLDPQQIEEDLFNHIVWA RIWRPWGFLF CIERPNELGF YWARS R KRIIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGTVQYQTRDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

Q09WV7 Protein Ycf2

1.9e-51

77.86

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+ TLLLRPEPRNPLDM+QNGS SI   RFLYEQ++SEFEE EGEGVLDPQ+IEEDLFNHIVWA RIWRPWGFLF CIE PNELGF YWARS R KRIIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGT+QYQTRDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

Q0ZIV6 Protein Ycf2

5.5e-51

77.86

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLLLRPEPRNPLDM+QNGS SI   RFLYE++ESEFEE  GEG LDPQQIEEDLFNHIVWA RIWRPWGFLF CIER NELGF YWARS R KRIIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGT+QYQTRDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

Q49KT6 Protein Ycf2

4.9e-52

78.63

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLLLRP+PRNPLDM+QNGS SI   RFLYE++ESEFEE EGEGVLDPQQIEEDLFNHIVWA RIWRPWGFLF CIERPN LGF YWARS R KRIIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGT+QYQTRDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

Q68RU4 Protein Ycf2

2.4e-51

77.86

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLLLRPEPRNPLDM+QNGS SI   RFLYE+ ESEFEE EGEG LDPQQIEEDLFNHIVWA RIWRPWGFLF CIERPNELGF YW+RS R KRI+Y
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGT+QYQTRDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

7.1e-46

73.28

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLL R EPR+PL M+Q+GS SI   RFLYE++ESEFEE EGEGVLDPQQIEEDLFNHIVWA RIWRP GFLF CIERPNELGF Y A S R KRIIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGT+QYQ RDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

7.1e-46

73.28

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Query:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY
        D+VTLL R EPR+PL M+Q+GS SI   RFLYE++ESEFEE EGEGVLDPQQIEEDLFNHIVWA RIWRP GFLF CIERPNELGF Y A S R KRIIY
Subjt:  DQVTLLLRPEPRNPLDMIQNGSYSI---RFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIY

Query:  -----------EFLQSGTVQYQTRDRSSKEQ
                   EFLQSGT+QYQ RDRSSKEQ
Subjt:  -----------EFLQSGTVQYQTRDRSSKEQ

Sequences

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CDS sequence

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GATCAAGTGACATTACTTCTTCGGCCCGAACCCAGGAATCCCTTAGATATGATACAAAATGGATCTTATTCTATCAGATTTCTCTATGAACAATTTGAGTCAGAGTTTGA
AGAAGAGGAAGGAGAAGGAGTCCTCGACCCACAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCTTAGAATATGGCGCCCTTGGGGCTTTCTATTTCATT
GTATCGAAAGGCCCAATGAATTAGGATTTTCCTATTGGGCTAGGTCACTTCGAGACAAGCGGATCATTTATGAGTTCTTGCAGAGTGGAACCGTGCAGTACCAGACACGA
GATAGATCTTCCAAAGAACAA

mRNA sequence

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Protein sequence

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DQVTLLLRPEPRNPLDMIQNGSYSIRFLYEQFESEFEEEEGEGVLDPQQIEEDLFNHIVWALRIWRPWGFLFHCIERPNELGFSYWARSLRDKRIIYEFLQSGTVQYQTR
DRSSKEQ

MC03g0077 (gene) of Bitter gourd (Dali-11) v1 genome